Variant report

Variant	rs9806344
Chromosome Location	chr15:41326711-41326712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41326386..41328188-chr15:41329412..41331864,2	K562	blood:
2	chr15:41326046..41328456-chr15:41407411..41410032,2	MCF-7	breast:
3	chr15:41324923..41327886-chr15:41329412..41332242,2	K562	blood:

Variant related genes	Relation type
ENSG00000128908	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10152296	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070319	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes]
rs11070320	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11630905	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16971263	0.88[ASW][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs16971264	1.00[MEX][hapmap]
rs16971413	1.00[TSI][hapmap]
rs16971463	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971507	1.00[MEX][hapmap]
rs2007255	1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes]
rs2412573	0.86[YRI][hapmap]
rs2412599	1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2412600	1.00[GIH][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28455970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28528813	0.89[AMR][1000 genomes]
rs2899010	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2925344	1.00[MEX][hapmap]
rs2925348	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2925349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2927067	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2928147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928149	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2928150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2928154	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947492	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2947495	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2947496	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2955812	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3101435	0.96[YRI][hapmap];0.83[AMR][1000 genomes]
rs3101438	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3101440	1.00[MEX][hapmap]
rs3101441	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4468583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs474351	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs480549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs487779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs4924533	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs4924534	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs496499	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513680	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs518137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs525551	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs538903	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs56955512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57008457	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57385441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142514	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs59405359	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs690773	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs691722	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs692703	0.94[AMR][1000 genomes]
rs7162003	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7167166	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169092	1.00[MEX][hapmap]
rs7172555	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174223	1.00[EUR][1000 genomes]
rs7174513	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7183191	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73399092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030958	1.00[MEX][hapmap]
rs8032956	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8034461	0.94[AMR][1000 genomes]
rs8035532	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043232	0.88[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes]
rs9806730	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41280400-41339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:41306800-41338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:41307600-41335000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41308800-41331200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:41308800-41337000	Weak transcription	Colonic Mucosa	Colon
8	chr15:41309000-41339200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:41309400-41332600	Weak transcription	Gastric	stomach
10	chr15:41310000-41333200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:41310000-41333400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:41311000-41328800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:41311400-41335400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:41313400-41332800	Weak transcription	Brain Angular Gyrus	brain
15	chr15:41313400-41333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:41313400-41336000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:41313400-41336200	Weak transcription	Brain Substantia Nigra	brain
18	chr15:41314000-41333000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:41314000-41335600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:41314800-41331800	Weak transcription	Fetal Brain Male	brain
21	chr15:41317000-41327400	Weak transcription	Aorta	Aorta
22	chr15:41317000-41331600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:41317000-41332200	Weak transcription	Right Ventricle	heart
24	chr15:41317400-41331600	Weak transcription	Fetal Kidney	kidney
25	chr15:41317400-41331600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:41317400-41332200	Weak transcription	Ovary	ovary
27	chr15:41317600-41332200	Weak transcription	HSMMtube	muscle
28	chr15:41318200-41331000	Weak transcription	Fetal Heart	heart
29	chr15:41318400-41334400	Weak transcription	Small Intestine	intestine
30	chr15:41319400-41331000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:41319400-41331600	Weak transcription	Fetal Brain Female	brain
32	chr15:41319400-41335000	Weak transcription	Brain Germinal Matrix	brain
33	chr15:41319400-41339800	Weak transcription	Psoas Muscle	Psoas
34	chr15:41319600-41332600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:41319600-41335000	Weak transcription	A549	lung
36	chr15:41319600-41337000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:41319800-41330200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:41319800-41330600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr15:41319800-41331200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:41319800-41332200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:41319800-41332400	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:41320000-41331000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr15:41320000-41331000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:41320000-41331200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:41320000-41331600	Weak transcription	NHLF	lung
46	chr15:41320000-41332400	Weak transcription	Thymus	Thymus
47	chr15:41320000-41337000	Weak transcription	Esophagus	oesophagus
48	chr15:41320000-41337200	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:41320200-41332800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:41320400-41330800	Weak transcription	Brain Anterior Caudate	brain

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