Variant report

Variant	rs73401689
Chromosome Location	chr15:41342556-41342557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10518712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11630905	1.00[EUR][1000 genomes]
rs1474228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971413	0.82[AFR][1000 genomes]
rs16971500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412599	0.83[AMR][1000 genomes]
rs2412600	0.83[AMR][1000 genomes]
rs2412602	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2925348	1.00[EUR][1000 genomes]
rs2947492	1.00[EUR][1000 genomes]
rs2947496	1.00[EUR][1000 genomes]
rs4924534	1.00[EUR][1000 genomes]
rs538903	1.00[EUR][1000 genomes]
rs57008457	1.00[EUR][1000 genomes]
rs57902964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142514	1.00[EUR][1000 genomes]
rs59289835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59405359	1.00[EUR][1000 genomes]
rs60036819	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6492975	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs692703	1.00[EUR][1000 genomes]
rs7162003	1.00[EUR][1000 genomes]
rs7163286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165020	0.81[AFR][1000 genomes]
rs7165159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174223	0.83[AMR][1000 genomes]
rs7183191	1.00[EUR][1000 genomes]
rs73399079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399100	1.00[EUR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes]
rs73399694	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73401004	1.00[AMR][1000 genomes]
rs73401688	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401700	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031345	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053462	chr15:41270067-41396094	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41276600-41354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41324400-41350400	Weak transcription	Pancreas	Pancrea
4	chr15:41325600-41354000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr15:41325800-41354000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:41327800-41350800	Weak transcription	Aorta	Aorta
7	chr15:41328400-41353200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:41328800-41388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:41329400-41353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:41329800-41353400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:41330000-41351600	Strong transcription	Primary T cells from cord blood	blood
12	chr15:41330200-41353400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:41330200-41354000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:41330400-41344000	Strong transcription	Hela-S3	cervix
15	chr15:41330400-41352400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:41330400-41352800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:41330400-41353000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:41330400-41353000	Strong transcription	Dnd41	blood
19	chr15:41330400-41354000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:41330400-41354400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr15:41330600-41352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:41330600-41353200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:41330600-41353600	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr15:41330800-41345400	Strong transcription	Fetal Lung	lung
25	chr15:41330800-41352200	Strong transcription	Primary B cells from cord blood	blood
26	chr15:41330800-41353000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:41330800-41353200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:41330800-41353200	Strong transcription	Fetal Thymus	thymus
29	chr15:41330800-41353400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:41330800-41353600	Strong transcription	Placenta	Placenta
31	chr15:41330800-41354600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:41331000-41345400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:41331000-41352600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:41331000-41352800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:41331000-41355600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:41331200-41354000	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr15:41331200-41354000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:41331400-41352200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:41331600-41352400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:41331600-41352800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:41332400-41355800	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:41332600-41345000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:41332600-41355600	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:41333600-41352400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:41334400-41343800	Strong transcription	Brain Cingulate Gyrus	brain
46	chr15:41334400-41353400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:41334600-41343200	Strong transcription	HUVEC	blood vessel
48	chr15:41334600-41389000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:41334800-41343000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:41335000-41343600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links