Variant report

Variant	rs2412602
Chromosome Location	chr15:41421118-41421119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10518712	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11070319	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11630905	1.00[EUR][1000 genomes]
rs1474228	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971263	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16971413	1.00[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16971463	1.00[TSI][hapmap]
rs16971500	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412599	0.82[ASW][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs2412600	0.82[ASW][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs2925348	1.00[EUR][1000 genomes]
rs2947492	1.00[EUR][1000 genomes]
rs2947496	1.00[EUR][1000 genomes]
rs3101438	1.00[TSI][hapmap]
rs474351	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4924533	1.00[TSI][hapmap]
rs4924534	1.00[EUR][1000 genomes]
rs496499	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs538903	1.00[EUR][1000 genomes]
rs57008457	1.00[EUR][1000 genomes]
rs57902964	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142514	1.00[EUR][1000 genomes]
rs59289835	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59405359	1.00[EUR][1000 genomes]
rs60036819	0.80[AMR][1000 genomes]
rs6492975	0.80[AMR][1000 genomes]
rs690773	1.00[TSI][hapmap]
rs692703	1.00[EUR][1000 genomes]
rs7162003	1.00[EUR][1000 genomes]
rs7162394	0.92[YRI][hapmap]
rs7163286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165020	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap]
rs7165159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172555	1.00[TSI][hapmap]
rs7174223	0.83[AMR][1000 genomes]
rs7174513	1.00[TSI][hapmap]
rs7178308	1.00[GIH][hapmap]
rs7183191	1.00[EUR][1000 genomes]
rs73399079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73399100	1.00[EUR][1000 genomes]
rs73399681	0.80[AMR][1000 genomes]
rs73399694	0.80[AMR][1000 genomes]
rs73401004	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73401688	1.00[AMR][1000 genomes]
rs73401689	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401695	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401698	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73401700	1.00[AMR][1000 genomes]
rs8031345	1.00[YRI][hapmap]
rs8043232	1.00[TSI][hapmap]
rs9806344	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41409600-41427600	Weak transcription	Hela-S3	cervix
2	chr15:41418400-41423200	Weak transcription	Stomach Mucosa	stomach
3	chr15:41419000-41421600	Enhancers	HepG2	liver
4	chr15:41419600-41421800	Enhancers	Liver	Liver
5	chr15:41420200-41421200	Enhancers	Fetal Intestine Small	intestine
6	chr15:41420600-41421400	Enhancers	Fetal Intestine Large	intestine
7	chr15:41421000-41421200	Enhancers	A549	lung

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