Variant report

Variant	rs116358039
Chromosome Location	chr3:21788020-21788021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1007665	chr3:21781727-21809266	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1011725	chr3:21786893-21804428	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21776600-21788800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:21778200-21791400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:21780600-21791400	Weak transcription	Fetal Heart	heart
4	chr3:21781000-21788600	Weak transcription	Right Ventricle	heart
5	chr3:21781000-21788800	Weak transcription	Left Ventricle	heart
6	chr3:21784200-21790600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:21786400-21789600	Enhancers	Fetal Kidney	kidney
8	chr3:21786400-21789800	Enhancers	NH-A	brain
9	chr3:21786400-21793600	Active TSS	Aorta	Aorta
10	chr3:21786600-21788600	Weak transcription	Right Atrium	heart
11	chr3:21786600-21790000	Enhancers	Fetal Lung	lung
12	chr3:21786800-21788400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:21786800-21788800	Weak transcription	HMEC	breast
14	chr3:21787000-21788200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:21787000-21788200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:21787000-21788200	Weak transcription	HSMMtube	muscle
17	chr3:21787000-21788200	Active TSS	NHDF-Ad	bronchial
18	chr3:21787000-21788800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:21787000-21788800	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:21787000-21789000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:21787200-21788800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr3:21787200-21789000	Weak transcription	Fetal Brain Male	brain
23	chr3:21787200-21791400	Weak transcription	HSMM	muscle
24	chr3:21787400-21789200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:21787800-21788400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:21787800-21789400	Enhancers	Fetal Stomach	stomach
27	chr3:21787800-21789600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:21788000-21788200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:21788000-21788400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:21788000-21789200	Weak transcription	Brain Germinal Matrix	brain
31	chr3:21788000-21791200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links