Variant report

Variant	rs11636402
Chromosome Location	chr15:40465905-40465906
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40333994..40336667-chr15:40464159..40466672,2	K562	blood:
2	chr15:40464134..40466311-chr15:40467677..40469915,3	K562	blood:
3	chr15:40459484..40463009-chr15:40464134..40467795,7	K562	blood:
4	chr15:40463800..40466311-chr15:40468415..40471239,2	K562	blood:
5	chr15:40460905..40463458-chr15:40465734..40469954,4	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10518681	0.95[EUR][1000 genomes]
rs10518682	0.95[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11632939	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11634034	0.84[EUR][1000 genomes]
rs11637268	0.94[EUR][1000 genomes]
rs11638942	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11854027	0.95[EUR][1000 genomes]
rs11854103	0.95[EUR][1000 genomes]
rs11854965	0.95[EUR][1000 genomes]
rs12438986	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12898627	0.91[EUR][1000 genomes]
rs12899779	0.93[EUR][1000 genomes]
rs12902191	0.95[EUR][1000 genomes]
rs12908093	0.95[EUR][1000 genomes]
rs12910199	0.94[EUR][1000 genomes]
rs12911157	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913620	0.94[EUR][1000 genomes]
rs12913741	0.94[EUR][1000 genomes]
rs12913803	0.93[EUR][1000 genomes]
rs12915249	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12916901	0.95[EUR][1000 genomes]
rs1471583	0.95[EUR][1000 genomes]
rs1565863	0.95[EUR][1000 genomes]
rs1565864	0.95[EUR][1000 genomes]
rs1565865	0.95[EUR][1000 genomes]
rs16970409	0.95[EUR][1000 genomes]
rs1801376	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277559	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412480	0.95[EUR][1000 genomes]
rs2412482	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3214012	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34358001	0.98[EUR][1000 genomes]
rs4244573	0.95[EUR][1000 genomes]
rs4244574	0.95[EUR][1000 genomes]
rs4923857	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924419	0.93[EUR][1000 genomes]
rs4924420	0.93[EUR][1000 genomes]
rs4924424	0.95[EUR][1000 genomes]
rs4924427	0.91[EUR][1000 genomes]
rs4924430	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924432	0.94[ASN][1000 genomes]
rs492813	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500693	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs521896	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs597752	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6492932	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492935	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7162894	0.90[EUR][1000 genomes]
rs7164047	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7169518	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7170412	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7177759	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs797420	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8037190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs811746	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40453800-40474600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:40453800-40525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:40454000-40471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:40454000-40474600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:40454000-40515200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:40454200-40471400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:40454600-40502400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:40454800-40474400	Weak transcription	Primary B cells from cord blood	blood
9	chr15:40454800-40524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:40455000-40474600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:40455000-40474600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:40455400-40468800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:40455400-40530400	Weak transcription	Fetal Brain Female	brain
14	chr15:40455600-40470800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:40455600-40477600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr15:40455600-40518200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:40455600-40522200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:40455600-40530400	Weak transcription	Brain Germinal Matrix	brain
19	chr15:40456000-40470600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:40456200-40466400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:40456200-40467000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:40456200-40469000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:40456200-40471600	Strong transcription	H1 Cell Line	embryonic stem cell
24	chr15:40456200-40471600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:40456200-40524000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:40456200-40524000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:40456400-40466000	Strong transcription	K562	blood
28	chr15:40456600-40471400	Strong transcription	Fetal Thymus	thymus
29	chr15:40457000-40471600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:40457400-40473200	Strong transcription	Dnd41	blood
31	chr15:40457400-40476000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:40460800-40466800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr15:40460800-40466800	Strong transcription	HMEC	breast
34	chr15:40461600-40486800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:40461800-40466200	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr15:40461800-40466200	Strong transcription	HUVEC	blood vessel
37	chr15:40462000-40466200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:40462000-40466800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:40462200-40466000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:40462200-40466400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:40462200-40466400	Strong transcription	GM12878-XiMat	blood
42	chr15:40462200-40466600	Strong transcription	NH-A	brain
43	chr15:40462200-40467400	Strong transcription	HSMM	muscle
44	chr15:40462200-40474200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:40462600-40466000	Strong transcription	Fetal Lung	lung
46	chr15:40462600-40466400	Strong transcription	HepG2	liver
47	chr15:40462800-40482200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr15:40463000-40466000	Strong transcription	Thymus	Thymus
49	chr15:40463800-40468200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:40463800-40474200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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