Variant report

Variant	rs811746
Chromosome Location	chr15:40445371-40445372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10518681	0.95[EUR][1000 genomes]
rs10518682	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11632939	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11634034	0.84[EUR][1000 genomes]
rs11636402	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637268	0.91[EUR][1000 genomes]
rs11638942	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11854027	0.96[EUR][1000 genomes]
rs11854103	0.96[EUR][1000 genomes]
rs11854965	0.96[EUR][1000 genomes]
rs12438986	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12898627	0.92[EUR][1000 genomes]
rs12899779	0.93[EUR][1000 genomes]
rs12902191	0.95[EUR][1000 genomes]
rs12908093	0.95[EUR][1000 genomes]
rs12910199	0.95[EUR][1000 genomes]
rs12911157	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12913620	0.95[EUR][1000 genomes]
rs12913741	0.95[EUR][1000 genomes]
rs12913803	0.93[EUR][1000 genomes]
rs12915249	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12916901	0.95[EUR][1000 genomes]
rs1471583	0.95[EUR][1000 genomes]
rs1565863	0.95[EUR][1000 genomes]
rs1565864	0.95[EUR][1000 genomes]
rs1565865	0.95[EUR][1000 genomes]
rs16970409	0.95[EUR][1000 genomes]
rs1801376	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2277559	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412480	0.95[EUR][1000 genomes]
rs2412482	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3214012	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34358001	0.94[EUR][1000 genomes]
rs4244573	0.95[EUR][1000 genomes]
rs4244574	0.95[EUR][1000 genomes]
rs4923857	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4924419	0.93[EUR][1000 genomes]
rs4924420	0.94[EUR][1000 genomes]
rs4924424	0.95[EUR][1000 genomes]
rs4924427	0.94[EUR][1000 genomes]
rs4924430	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4924432	0.93[ASN][1000 genomes]
rs492813	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs500693	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs521896	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs597752	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6492932	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6492935	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7162894	0.88[EUR][1000 genomes]
rs7164047	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7169518	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7170412	0.81[EUR][1000 genomes]
rs7177759	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs797420	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8037190	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3500491	chr15:40417175-40446353	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3500492	chr15:40417175-40446353	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40438400-40446800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:40438800-40446800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:40440200-40446800	Weak transcription	Pancreas	Pancrea
4	chr15:40442600-40446800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:40442800-40448200	Weak transcription	Fetal Kidney	kidney
6	chr15:40443000-40446200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:40443000-40447600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:40443000-40447600	Weak transcription	Stomach Mucosa	stomach
9	chr15:40443200-40446400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:40443200-40452800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:40444000-40445800	Weak transcription	Placenta	Placenta
12	chr15:40444400-40446600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:40444400-40448400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:40445000-40446800	Weak transcription	HMEC	breast
15	chr15:40445200-40446400	Weak transcription	NHEK	skin
16	chr15:40445200-40446600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:40445200-40446800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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