Variant report

Variant	rs11636405
Chromosome Location	chr15:77737056-77737057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77725793..77727542-chr15:77736986..77738782,2	MCF-7	breast:
2	chr15:77736362..77738076-chr15:77750153..77752995,3	K562	blood:
3	chr15:77735690..77738076-chr15:77750153..77753077,3	K562	blood:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1191198	1.00[AMR][1000 genomes]
rs8028686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038518	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77714400-77739200	Weak transcription	Right Atrium	heart
3	chr15:77714400-77741600	Weak transcription	Fetal Thymus	thymus
4	chr15:77714800-77739200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:77715000-77740600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:77715400-77737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:77716400-77741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:77716800-77738000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:77716800-77742600	Weak transcription	Hela-S3	cervix
10	chr15:77717000-77754400	Weak transcription	K562	blood
11	chr15:77717200-77739400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:77720000-77739400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:77720200-77743000	Weak transcription	Primary B cells from cord blood	blood
14	chr15:77723200-77738000	Weak transcription	Right Ventricle	heart
15	chr15:77727200-77741200	Weak transcription	Fetal Stomach	stomach
16	chr15:77727400-77747800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:77728000-77737600	Weak transcription	Left Ventricle	heart
18	chr15:77728200-77746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:77728400-77738000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:77729200-77740600	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:77729400-77747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:77729800-77740600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:77729800-77747200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr15:77730600-77740200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:77730600-77758800	Weak transcription	Lung	lung
29	chr15:77733200-77739600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:77733200-77744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:77733200-77748000	Weak transcription	HMEC	breast
32	chr15:77733200-77749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:77733200-77750200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:77733400-77741600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:77733400-77746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:77733400-77747000	Weak transcription	NH-A	brain
37	chr15:77733400-77747000	Weak transcription	NHDF-Ad	bronchial
38	chr15:77733600-77738000	Weak transcription	Psoas Muscle	Psoas
39	chr15:77733600-77739400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:77733600-77741600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:77733600-77742000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:77733600-77742000	Weak transcription	HSMM	muscle
43	chr15:77734000-77737400	Weak transcription	Ovary	ovary
44	chr15:77734000-77745000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:77734200-77739200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:77734400-77740600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:77734600-77738000	Weak transcription	Fetal Heart	heart
48	chr15:77734600-77739200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:77734600-77739200	Weak transcription	A549	lung
50	chr15:77734600-77739400	Weak transcription	Stomach Mucosa	stomach

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