Variant report

Variant	rs1191198
Chromosome Location	chr15:77677326-77677327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77675482..77678764-chr15:77710197..77713556,3	K562	blood:
2	chr15:77671092..77674187-chr15:77674414..77677871,3	K562	blood:
3	chr15:77676422..77679960-chr15:77680439..77684994,6	K562	blood:

Variant related genes	Relation type
ENSG00000173517	Chromatin interaction
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11636405	1.00[AMR][1000 genomes]
rs8028686	1.00[AMR][1000 genomes]
rs8038518	1.00[AMR][1000 genomes]
rs937236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv1836778	chr15:77608747-77694607	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1800929	chr15:77664889-77697976	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77639800-77687000	Weak transcription	Primary B cells from cord blood	blood
2	chr15:77647000-77687200	Weak transcription	A549	lung
3	chr15:77648600-77685800	Weak transcription	Gastric	stomach
4	chr15:77656400-77683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:77663000-77680200	Weak transcription	Osteobl	bone
6	chr15:77664600-77678200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:77669400-77683400	Weak transcription	Fetal Stomach	stomach
8	chr15:77673200-77683400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:77674200-77677800	Weak transcription	Left Ventricle	heart
10	chr15:77674200-77680200	Weak transcription	Right Atrium	heart
11	chr15:77674200-77681800	Weak transcription	Aorta	Aorta
12	chr15:77674200-77686600	Weak transcription	Ovary	ovary
13	chr15:77674800-77677800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:77674800-77677800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:77674800-77684000	Weak transcription	Stomach Mucosa	stomach
16	chr15:77675000-77678000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:77675000-77684400	Weak transcription	Spleen	Spleen
18	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:77675600-77685200	Weak transcription	Lung	lung
20	chr15:77675800-77677600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:77675800-77677800	Weak transcription	Brain Anterior Caudate	brain
22	chr15:77676400-77677800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:77676400-77678400	Enhancers	GM12878-XiMat	blood
24	chr15:77676600-77677400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr15:77676600-77678200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:77676600-77678400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:77676600-77679200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:77676600-77680400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:77676800-77677600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr15:77676800-77677800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:77676800-77677800	Weak transcription	Brain Angular Gyrus	brain
32	chr15:77676800-77678200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr15:77676800-77680000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:77676800-77681600	Enhancers	Fetal Heart	heart
35	chr15:77677000-77677400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:77677000-77677600	Enhancers	Right Ventricle	heart
37	chr15:77677000-77678000	Enhancers	Brain Hippocampus Middle	brain
38	chr15:77677000-77678000	Enhancers	HMEC	breast
39	chr15:77677000-77678000	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr15:77677000-77678200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:77677000-77679600	Weak transcription	Adipose Nuclei	Adipose
42	chr15:77677000-77680600	Enhancers	Brain Substantia Nigra	brain
43	chr15:77677200-77677600	Weak transcription	Psoas Muscle	Psoas
44	chr15:77677200-77677600	Weak transcription	NHDF-Ad	bronchial
45	chr15:77677200-77677800	Enhancers	Primary T cells from cord blood	blood
46	chr15:77677200-77678000	Enhancers	Brain Cingulate Gyrus	brain
47	chr15:77677200-77679600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:77677200-77685800	Weak transcription	NHLF	lung

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