Variant report

Variant	rs11636736
Chromosome Location	chr15:74968240-74968241
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74967287..74968938-chr15:74986943..74989604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11634261	0.85[EUR][1000 genomes]
rs74025821	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74936000-74968800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74947800-74970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:74957000-74987000	Weak transcription	HMEC	breast
4	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
5	chr15:74957200-74968400	Weak transcription	Small Intestine	intestine
6	chr15:74957400-74968800	Weak transcription	Stomach Mucosa	stomach
7	chr15:74957400-74987200	Weak transcription	A549	lung
8	chr15:74964000-74970000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:74964000-74977200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74964000-74977200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:74964000-74977200	Weak transcription	Pancreas	Pancrea
12	chr15:74964000-74987200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:74964000-74987400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:74964200-74977800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:74964200-74987200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:74965600-74968600	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:74965600-74968600	Weak transcription	Fetal Brain Male	brain
18	chr15:74965600-74976600	Weak transcription	NHEK	skin
19	chr15:74965600-74977000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:74965600-74977200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:74965600-74977200	Weak transcription	HSMMtube	muscle
22	chr15:74965600-74977400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:74965600-74977400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:74965600-74987400	Weak transcription	Right Ventricle	heart
25	chr15:74965600-74987400	Weak transcription	Spleen	Spleen
26	chr15:74965600-74987600	Weak transcription	Esophagus	oesophagus
27	chr15:74965800-74971600	Weak transcription	Brain Germinal Matrix	brain
28	chr15:74965800-74977000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:74965800-74977000	Weak transcription	K562	blood
30	chr15:74965800-74977200	Weak transcription	Fetal Kidney	kidney
31	chr15:74965800-74977600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:74965800-74987000	Weak transcription	HUVEC	blood vessel
33	chr15:74965800-74987200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:74965800-74987400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr15:74966000-74977000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:74966000-74977200	Weak transcription	Thymus	Thymus
37	chr15:74966000-74982800	Weak transcription	Colonic Mucosa	Colon
38	chr15:74966400-74986400	Weak transcription	NHDF-Ad	bronchial
39	chr15:74966600-74987200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:74966800-74977000	Weak transcription	Fetal Brain Female	brain
41	chr15:74967000-74972800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:74967000-74986600	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:74967000-74987000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr15:74967200-74969000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:74967200-74973400	Weak transcription	Brain Angular Gyrus	brain
46	chr15:74967200-74977000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:74967200-74987600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:74967400-74972000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:74967400-74975000	Weak transcription	Fetal Intestine Small	intestine
50	chr15:74967400-74975800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links