Variant report

Variant	rs74025821
Chromosome Location	chr15:74977829-74977830
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74976894..74978598-chr15:74985904..74987850,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11629492	1.00[AMR][1000 genomes]
rs11631784	0.84[EUR][1000 genomes]
rs11632086	1.00[AMR][1000 genomes]
rs11633697	1.00[AMR][1000 genomes]
rs11634261	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11636736	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16970170	1.00[AMR][1000 genomes]
rs17343071	1.00[AMR][1000 genomes]
rs57317343	1.00[AMR][1000 genomes]
rs57592570	1.00[AMR][1000 genomes]
rs60130631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74957000-74987000	Weak transcription	HMEC	breast
2	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
3	chr15:74957400-74987200	Weak transcription	A549	lung
4	chr15:74964000-74987200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:74964000-74987400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:74964200-74987200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:74965600-74987400	Weak transcription	Right Ventricle	heart
8	chr15:74965600-74987400	Weak transcription	Spleen	Spleen
9	chr15:74965600-74987600	Weak transcription	Esophagus	oesophagus
10	chr15:74965800-74987000	Weak transcription	HUVEC	blood vessel
11	chr15:74965800-74987200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:74965800-74987400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:74966000-74982800	Weak transcription	Colonic Mucosa	Colon
14	chr15:74966400-74986400	Weak transcription	NHDF-Ad	bronchial
15	chr15:74966600-74987200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:74967000-74986600	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:74967000-74987000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:74967200-74987600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:74967400-74978800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:74967400-74985400	Weak transcription	Brain Substantia Nigra	brain
21	chr15:74967400-74986800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:74967400-74987000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:74967400-74987000	Weak transcription	NH-A	brain
24	chr15:74967400-74987200	Weak transcription	NHLF	lung
25	chr15:74967400-74987400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:74967400-74987400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:74967400-74987400	Weak transcription	Gastric	stomach
28	chr15:74967400-74987400	Weak transcription	HSMM	muscle
29	chr15:74967600-74978600	Weak transcription	Aorta	Aorta
30	chr15:74967600-74985400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:74967600-74985600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:74967600-74986600	Weak transcription	Brain Anterior Caudate	brain
33	chr15:74967600-74986600	Weak transcription	Osteobl	bone
34	chr15:74967600-74987200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:74967600-74987200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:74967600-74987400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:74972400-74987400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:74975000-74979600	Strong transcription	Fetal Intestine Small	intestine
39	chr15:74976400-74979600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:74976600-74979200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:74976600-74979400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr15:74976600-74979600	Strong transcription	NHEK	skin
43	chr15:74976600-74979800	Strong transcription	Liver	Liver
44	chr15:74976800-74978200	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr15:74976800-74978200	ZNF genes & repeats	GM12878-XiMat	blood
46	chr15:74976800-74979400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:74976800-74979600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:74977000-74978200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:74977000-74978200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr15:74977000-74978200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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