Variant report

Variant	rs11633697
Chromosome Location	chr15:74761842-74761843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11629492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11632086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11634261	1.00[AMR][1000 genomes]
rs11637129	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16970170	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17343071	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28362873	0.84[AFR][1000 genomes]
rs28362914	0.85[AFR][1000 genomes]
rs55936349	0.95[AFR][1000 genomes]
rs56253831	0.97[AFR][1000 genomes]
rs57317343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57592570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60130631	1.00[AMR][1000 genomes]
rs74025808	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs74025809	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs74025810	0.97[AFR][1000 genomes]
rs74025811	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs74025821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv3415084	chr15:74761571-74762113	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754000-74767000	Weak transcription	Spleen	Spleen
2	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
3	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:74754600-74762600	Weak transcription	Pancreas	Pancrea
5	chr15:74754600-74762800	Weak transcription	Right Ventricle	heart
6	chr15:74754600-74764400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74754600-74766400	Weak transcription	Fetal Kidney	kidney
8	chr15:74754600-74766800	Weak transcription	Lung	lung
9	chr15:74754600-74767000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:74754600-74767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:74754600-74773800	Weak transcription	Gastric	stomach
16	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
17	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
18	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
21	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
23	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:74754800-74762200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:74754800-74765600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
29	chr15:74754800-74770000	Weak transcription	NHLF	lung
30	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:74755200-74762000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:74755200-74762600	Weak transcription	Brain Germinal Matrix	brain
34	chr15:74755200-74762800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:74755200-74764200	Weak transcription	Fetal Brain Male	brain
36	chr15:74755200-74767000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:74755200-74768200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:74755200-74773400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:74755200-74789200	Weak transcription	NHEK	skin
42	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:74755400-74762400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:74755400-74765600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:74755400-74768400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:74755400-74770800	Weak transcription	Fetal Lung	lung
48	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:74755600-74763200	Weak transcription	Hela-S3	cervix

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