Variant report

Variant	rs28362914
Chromosome Location	chr15:74710305-74710306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74703939..74707088-chr15:74707597..74710860,4	K562	blood:
2	chr15:74708483..74711346-chr15:74713083..74715062,3	MCF-7	breast:
3	chr15:74683786..74686291-chr15:74709517..74711848,2	K562	blood:
4	chr15:74689719..74694435-chr15:74706184..74713253,9	MCF-7	breast:
5	chr15:74706143..74707711-chr15:74709343..74712295,2	K562	blood:
6	chr15:74709055..74711069-chr15:74716225..74718265,2	MCF-7	breast:
7	chr15:74708430..74711665-chr15:74722964..74726115,3	K562	blood:
8	chr15:74709821..74711608-chr15:74905554..74908094,2	MCF-7	breast:
9	chr15:74708765..74710665-chr15:74717275..74720280,3	K562	blood:
10	chr15:74709534..74711192-chr15:74725861..74727762,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11632086	0.85[AFR][1000 genomes]
rs11633697	0.85[AFR][1000 genomes]
rs17343071	0.81[AFR][1000 genomes]
rs28362873	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28362897	1.00[AMR][1000 genomes]
rs28362922	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28362929	0.83[AFR][1000 genomes]
rs55936349	0.90[AFR][1000 genomes]
rs56253831	0.88[AFR][1000 genomes]
rs57317343	0.83[AFR][1000 genomes]
rs57592570	0.85[AFR][1000 genomes]
rs74025808	0.90[AFR][1000 genomes]
rs74025809	0.92[AFR][1000 genomes]
rs74025810	0.88[AFR][1000 genomes]
rs74025811	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904353	chr15:74697084-74716609	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904354	chr15:74697084-74722924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
8	nsv569974	chr15:74701200-74727113	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
9	esv3327912	chr15:74706599-74710797	Genic enhancers Strong transcription Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv904357	chr15:74707993-74716609	Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv904358	chr15:74708461-74716609	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv569975	chr15:74709071-74711769	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv904359	chr15:74709071-74712937	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv569976	chr15:74709071-74715211	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv569977	chr15:74709405-74710945	Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv569978	chr15:74709405-74711122	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv569979	chr15:74709405-74722924	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv569980	chr15:74709566-74711631	Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv569981	chr15:74709637-74711631	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv904361	chr15:74709975-74712178	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv904362	chr15:74709975-74712937	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv904363	chr15:74709975-74713279	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
25	nsv904365	chr15:74710125-74712178	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv904366	chr15:74710125-74716609	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
27	nsv569982	chr15:74710125-74721969	Genic enhancers Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
28	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74696200-74710400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74696200-74711400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:74696200-74712600	Weak transcription	Right Atrium	heart
4	chr15:74696400-74712200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:74697000-74712400	Weak transcription	Fetal Heart	heart
6	chr15:74697000-74712600	Weak transcription	Fetal Lung	lung
7	chr15:74699600-74716600	Weak transcription	Fetal Kidney	kidney
8	chr15:74700000-74713800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:74700200-74711200	Weak transcription	Fetal Intestine Large	intestine
10	chr15:74700400-74710800	Weak transcription	Ovary	ovary
11	chr15:74700600-74712200	Weak transcription	Fetal Brain Male	brain
12	chr15:74700800-74712400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:74701200-74714600	Genic enhancers	Spleen	Spleen
14	chr15:74701400-74712600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:74702000-74710800	Strong transcription	Brain Germinal Matrix	brain
16	chr15:74702000-74712400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:74702200-74710800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:74702200-74710800	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr15:74702200-74715000	Weak transcription	Colonic Mucosa	Colon
20	chr15:74702400-74710400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:74702400-74711000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:74702400-74711200	Strong transcription	Fetal Stomach	stomach
23	chr15:74702600-74710400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:74702600-74711000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:74702600-74712200	Strong transcription	NHEK	skin
26	chr15:74702800-74712200	Weak transcription	Pancreas	Pancrea
27	chr15:74703000-74710800	Strong transcription	HepG2	liver
28	chr15:74703200-74712600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:74703200-74713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:74703800-74713000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:74704400-74710800	Strong transcription	K562	blood
32	chr15:74704600-74711200	Weak transcription	Liver	Liver
33	chr15:74705200-74712800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:74705400-74710400	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:74705800-74711200	Strong transcription	Fetal Brain Female	brain
36	chr15:74705800-74711400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:74706200-74710600	Strong transcription	Gastric	stomach
38	chr15:74706200-74713600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:74706400-74711800	Genic enhancers	NH-A	brain
40	chr15:74706400-74714600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:74706600-74710400	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr15:74706800-74710400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:74706800-74710400	Strong transcription	Lung	lung
44	chr15:74706800-74711800	Genic enhancers	Thymus	Thymus
45	chr15:74706800-74715000	Weak transcription	Aorta	Aorta
46	chr15:74707200-74711400	Genic enhancers	Placenta	Placenta
47	chr15:74707200-74722400	Weak transcription	Fetal Intestine Small	intestine
48	chr15:74707400-74712200	Genic enhancers	GM12878-XiMat	blood
49	chr15:74707600-74710600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:74707600-74711800	Genic enhancers	Primary B cells from peripheral blood	blood

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