Variant report

Variant	rs74025810
Chromosome Location	chr15:74747413-74747414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:74747244-74747593	GM12891	blood:	n/a	n/a
2	TCF3	chr15:74747095-74747416	GM12878	blood:	n/a	n/a
3	SPI1	chr15:74747267-74747589	GM12878	blood:	n/a	n/a
4	IKZF1	chr15:74747096-74747709	GM12878	blood:	n/a	n/a
5	SPI1	chr15:74747350-74747534	K562	blood:	n/a	n/a
6	RUNX3	chr15:74747064-74747416	GM12878	blood:	n/a	n/a
7	CUX1	chr15:74747110-74747480	GM12878	blood:	n/a	n/a
8	SPI1	chr15:74747245-74747599	HL-60	blood:	n/a	n/a
9	SPI1	chr15:74747326-74747528	GM12878	blood:	n/a	n/a
10	SPI1	chr15:74747241-74747590	GM12891	blood:	n/a	n/a
11	MXI1	chr15:74747187-74747450	GM12878	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74746310..74749476-chr15:74751407..74754254,4	MCF-7	breast:
2	chr15:74718075..74720590-chr15:74744935..74747887,2	K562	blood:
3	chr15:74745993..74748683-chr15:74753892..74756532,4	K562	blood:
4	chr15:74745747..74749523-chr15:74749987..74753880,5	K562	blood:

No data

Variant related genes	Relation type
UBL7	TF binding region
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11632086	0.97[AFR][1000 genomes]
rs11633697	0.97[AFR][1000 genomes]
rs11637129	0.90[AFR][1000 genomes]
rs17343071	0.92[AFR][1000 genomes]
rs28362873	0.81[AFR][1000 genomes]
rs28362914	0.88[AFR][1000 genomes]
rs55936349	0.97[AFR][1000 genomes]
rs56253831	1.00[AFR][1000 genomes]
rs57317343	0.95[AFR][1000 genomes]
rs57592570	0.97[AFR][1000 genomes]
rs74025808	0.92[AFR][1000 genomes]
rs74025809	0.95[AFR][1000 genomes]
rs74025811	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74735600-74751200	Strong transcription	Thymus	Thymus
4	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
5	chr15:74736200-74751200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:74736400-74751400	Strong transcription	Fetal Muscle Leg	muscle
7	chr15:74736600-74747800	Strong transcription	Fetal Brain Female	brain
8	chr15:74736600-74749800	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:74736600-74751000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:74736600-74751200	Strong transcription	Fetal Intestine Small	intestine
11	chr15:74736600-74751400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr15:74736600-74751400	Strong transcription	Fetal Stomach	stomach
13	chr15:74736800-74747600	Strong transcription	Ovary	ovary
14	chr15:74736800-74748000	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:74736800-74749000	Strong transcription	Primary B cells from cord blood	blood
16	chr15:74736800-74749400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:74736800-74749600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:74736800-74751200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:74736800-74751200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:74736800-74751400	Strong transcription	Stomach Smooth Muscle	stomach
21	chr15:74736800-74751600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:74737000-74749200	Strong transcription	Brain Germinal Matrix	brain
23	chr15:74737000-74749400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:74737000-74750000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:74737000-74751200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:74737000-74751400	Strong transcription	Fetal Intestine Large	intestine
27	chr15:74737000-74751600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr15:74737200-74750800	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:74737200-74751200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:74737400-74747600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:74737400-74749000	Strong transcription	Brain Anterior Caudate	brain
32	chr15:74737400-74749600	Strong transcription	Left Ventricle	heart
33	chr15:74737400-74749800	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr15:74737600-74749400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:74737800-74748600	Strong transcription	Brain Cingulate Gyrus	brain
36	chr15:74737800-74752600	Weak transcription	HUVEC	blood vessel
37	chr15:74738600-74749400	Strong transcription	Fetal Lung	lung
38	chr15:74739800-74749600	Strong transcription	Liver	Liver
39	chr15:74741800-74752400	Weak transcription	HMEC	breast
40	chr15:74742000-74752600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:74742400-74752000	Weak transcription	Small Intestine	intestine
42	chr15:74742800-74752600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:74743000-74752600	Weak transcription	Psoas Muscle	Psoas
44	chr15:74743200-74752600	Weak transcription	Stomach Mucosa	stomach
45	chr15:74743600-74748800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:74743600-74752600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:74743600-74753000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:74744000-74748800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:74744200-74748000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr15:74744600-74747800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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