Variant report

Variant	rs74025808
Chromosome Location	chr15:74736609-74736610
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74735418..74737152-chr15:74739151..74742210,3	MCF-7	breast:
2	chr15:74735172..74738041-chr15:74740466..74742650,4	K562	blood:
3	chr15:74735765..74738345-chr15:74742759..74744562,2	K562	blood:
4	chr15:74734787..74738096-chr15:74738191..74740451,3	K562	blood:
5	chr15:74665832..74668344-chr15:74734420..74737401,2	K562	blood:
6	chr15:74732394..74736809-chr15:74750471..74755462,8	K562	blood:
7	chr15:74674450..74677326-chr15:74734711..74737166,2	K562	blood:
8	chr15:74724633..74727188-chr15:74734244..74737111,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11629492	0.91[EUR][1000 genomes]
rs11632086	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11633697	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11637129	0.88[AFR][1000 genomes]
rs17343071	0.90[AFR][1000 genomes]
rs28362873	0.88[AFR][1000 genomes]
rs28362897	0.84[AFR][1000 genomes]
rs28362914	0.90[AFR][1000 genomes]
rs55936349	0.95[AFR][1000 genomes]
rs56253831	0.92[AFR][1000 genomes]
rs57317343	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs57592570	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs74025809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74025810	0.92[AFR][1000 genomes]
rs74025811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726200-74736800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74726400-74737200	Weak transcription	Hela-S3	cervix
3	chr15:74726800-74736800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:74726800-74737400	Weak transcription	Esophagus	oesophagus
5	chr15:74726800-74738600	Weak transcription	Fetal Lung	lung
6	chr15:74726800-74740200	Weak transcription	A549	lung
7	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74727000-74736800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:74727000-74736800	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:74727000-74737400	Weak transcription	Lung	lung
11	chr15:74727000-74737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:74727200-74736800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:74727200-74736800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:74727200-74737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:74727200-74737200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:74727200-74737200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:74727200-74737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:74727200-74740600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:74727200-74747200	Weak transcription	NHDF-Ad	bronchial
20	chr15:74727400-74736800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:74727400-74737000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:74727600-74737000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:74727600-74737200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:74727600-74739400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:74729000-74736800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:74729000-74737000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:74731000-74736800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:74731000-74737000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:74731200-74736800	Weak transcription	Primary B cells from cord blood	blood
30	chr15:74731200-74737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:74731200-74737000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:74731200-74737200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:74731200-74737200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr15:74731200-74737200	Weak transcription	Dnd41	blood
35	chr15:74731200-74737400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:74731200-74737400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:74731200-74737600	Weak transcription	NHEK	skin
38	chr15:74731200-74738200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:74731200-74741200	Weak transcription	HMEC	breast
40	chr15:74733000-74737400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr15:74733200-74736800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:74733200-74737200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:74733800-74745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr15:74734200-74737800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:74734400-74737200	Enhancers	Brain Angular Gyrus	brain
46	chr15:74734400-74737200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr15:74734400-74737400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:74734400-74737400	Enhancers	Liver	Liver
49	chr15:74734400-74737600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:74734400-74737600	Weak transcription	Colonic Mucosa	Colon

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