Variant report

Variant	rs11629492
Chromosome Location	chr15:74766033-74766034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74753377..74756282-chr15:74764868..74766598,2	K562	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11632086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11633697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11634261	1.00[AMR][1000 genomes]
rs11637129	0.83[EUR][1000 genomes]
rs16970170	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17343071	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57317343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57592570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60130631	1.00[AMR][1000 genomes]
rs74025808	0.91[EUR][1000 genomes]
rs74025809	0.91[EUR][1000 genomes]
rs74025811	0.96[EUR][1000 genomes]
rs74025821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754000-74767000	Weak transcription	Spleen	Spleen
2	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
3	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:74754600-74766400	Weak transcription	Fetal Kidney	kidney
5	chr15:74754600-74766800	Weak transcription	Lung	lung
6	chr15:74754600-74767000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:74754600-74767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:74754600-74773800	Weak transcription	Gastric	stomach
13	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
14	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
15	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
18	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
20	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
24	chr15:74754800-74770000	Weak transcription	NHLF	lung
25	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:74755200-74767000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:74755200-74768200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:74755200-74773400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:74755200-74789200	Weak transcription	NHEK	skin
33	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:74755400-74768400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:74755400-74770800	Weak transcription	Fetal Lung	lung
37	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:74755600-74768400	Weak transcription	HMEC	breast
40	chr15:74755800-74770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
43	chr15:74757200-74766800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:74757400-74770000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr15:74757600-74766600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:74757800-74768000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:74759000-74766800	Strong transcription	Fetal Stomach	stomach
49	chr15:74760200-74767800	Strong transcription	Fetal Thymus	thymus
50	chr15:74760600-74769600	Strong transcription	Primary T cells from cord blood	blood

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