Variant report

Variant	rs11637129
Chromosome Location	chr15:74816965-74816966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
2	chr15:74797904..74799554-chr15:74816745..74819430,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11629492	0.83[EUR][1000 genomes]
rs11632086	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11633208	0.84[EUR][1000 genomes]
rs11633697	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16970170	1.00[EUR][1000 genomes]
rs17343071	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55936349	0.88[AFR][1000 genomes]
rs56253831	0.90[AFR][1000 genomes]
rs57317343	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57592570	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs74025808	0.88[AFR][1000 genomes]
rs74025809	0.85[AFR][1000 genomes]
rs74025810	0.90[AFR][1000 genomes]
rs74025811	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74804800-74821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74812000-74817800	Weak transcription	Osteobl	bone
3	chr15:74813600-74817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:74815400-74818400	Enhancers	Placenta	Placenta
5	chr15:74815400-74818800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:74815400-74819400	Enhancers	HMEC	breast
7	chr15:74815600-74818200	Weak transcription	K562	blood
8	chr15:74815800-74817800	Enhancers	NHEK	skin
9	chr15:74815800-74819400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:74815800-74819600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:74816000-74817000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:74816000-74818600	Enhancers	Hela-S3	cervix
13	chr15:74816200-74817000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:74816200-74817000	Enhancers	HUVEC	blood vessel
15	chr15:74816200-74817000	Enhancers	NH-A	brain
16	chr15:74816200-74817600	Weak transcription	Gastric	stomach
17	chr15:74816600-74817000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:74816600-74817600	Weak transcription	A549	lung
19	chr15:74816800-74817200	Enhancers	Stomach Mucosa	stomach
20	chr15:74816800-74817400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:74816800-74817600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:74816800-74817600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:74816800-74817800	Weak transcription	NHLF	lung
24	chr15:74816800-74818000	Weak transcription	Placenta Amnion	Placenta Amnion

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