Variant report

Variant	rs55936349
Chromosome Location	chr15:74782906-74782907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr15:74782167-74782947	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:74782058-74782913	GM12891	blood:	n/a	n/a
3	CTCF	chr15:74781842-74783093	SK-N-SH	brain:	n/a	chr15:74782329-74782338 chr15:74782323-74782341 chr15:74782318-74782339 chr15:74782324-74782340 chr15:74782326-74782336 chr15:74782325-74782338
4	MXI1	chr15:74781728-74783101	SK-N-SH	brain:	n/a	n/a
5	CTCF	chr15:74782760-74782910	AG10803	skin:	n/a	n/a
6	POLR2A	chr15:74782290-74782957	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:74780460..74785045-chr15:74835980..74840156,5	MCF-7	breast:
2	chr15:74753246..74754945-chr15:74782275..74784079,2	K562	blood:
3	chr15:74782235..74783902-chr15:74907609..74909890,2	K562	blood:
4	chr15:74781188..74783962-chr15:74831156..74833818,2	K562	blood:

Variant related genes	Relation type
ENSG00000260103	TF binding region
ENSG00000179335	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11632086	0.95[AFR][1000 genomes]
rs11633697	0.95[AFR][1000 genomes]
rs11637129	0.88[AFR][1000 genomes]
rs17343071	0.90[AFR][1000 genomes]
rs28362873	0.83[AFR][1000 genomes]
rs28362914	0.90[AFR][1000 genomes]
rs56253831	0.97[AFR][1000 genomes]
rs57317343	0.93[AFR][1000 genomes]
rs57592570	0.95[AFR][1000 genomes]
rs74025808	0.95[AFR][1000 genomes]
rs74025809	0.97[AFR][1000 genomes]
rs74025810	0.97[AFR][1000 genomes]
rs74025811	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:74755200-74789200	Weak transcription	NHEK	skin
7	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:74760800-74785600	Weak transcription	Ovary	ovary
11	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
12	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74767600-74804800	Weak transcription	Lung	lung
16	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:74770000-74796600	Weak transcription	HepG2	liver
19	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:74774000-74789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:74774000-74800000	Weak transcription	Pancreas	Pancrea
23	chr15:74774000-74803200	Weak transcription	Spleen	Spleen
24	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:74774200-74789400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:74774200-74800200	Weak transcription	Gastric	stomach
27	chr15:74774400-74803200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:74774600-74803200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
30	chr15:74776000-74784000	Weak transcription	Fetal Stomach	stomach
31	chr15:74782000-74800400	Weak transcription	Adipose Nuclei	Adipose
32	chr15:74782200-74799600	Weak transcription	Placenta	Placenta
33	chr15:74782400-74783000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
35	chr15:74782600-74789600	Weak transcription	HSMM	muscle
36	chr15:74782600-74796200	Weak transcription	Hela-S3	cervix
37	chr15:74782800-74783000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr15:74782800-74783000	Enhancers	Primary hematopoietic stem cells	blood
39	chr15:74782800-74783000	Enhancers	Dnd41	blood
40	chr15:74782800-74783200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr15:74782800-74783200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:74782800-74783200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:74782800-74785000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:74782800-74785400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:74782800-74785800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:74782800-74785800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr15:74782800-74787400	Weak transcription	Thymus	Thymus
48	chr15:74782800-74789400	Weak transcription	Primary T cells from cord blood	blood
49	chr15:74782800-74789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:74782800-74791800	Weak transcription	K562	blood

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