Variant report

Variant	rs11637118
Chromosome Location	chr15:59248836-59248837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59244376..59246814-chr15:59247299..59251469,3	MCF-7	breast:
2	chr15:59223706..59226061-chr15:59247333..59250101,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10162914	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11633839	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11853076	0.89[AMR][1000 genomes]
rs11855243	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12905056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905081	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916216	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3985721	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4774319	0.81[CHB][hapmap]
rs6416469	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8037673	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038504	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59242600-59249400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:59242800-59249400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:59244600-59249600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:59244800-59249400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:59244800-59249600	Weak transcription	Gastric	stomach
6	chr15:59245200-59249400	Weak transcription	GM12878-XiMat	blood
7	chr15:59245400-59249400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:59245400-59249400	Weak transcription	Dnd41	blood
9	chr15:59245400-59249800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:59245400-59249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:59245400-59249800	Weak transcription	NHLF	lung
12	chr15:59245400-59249800	Weak transcription	Osteobl	bone
13	chr15:59245400-59255000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:59245600-59249400	Weak transcription	A549	lung
15	chr15:59245600-59249400	Weak transcription	Hela-S3	cervix
16	chr15:59245600-59249600	Weak transcription	Adipose Nuclei	Adipose
17	chr15:59245600-59249800	Weak transcription	NHDF-Ad	bronchial
18	chr15:59245800-59249400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:59245800-59249400	Weak transcription	Stomach Mucosa	stomach
20	chr15:59245800-59249400	Weak transcription	K562	blood
21	chr15:59245800-59255000	Weak transcription	HMEC	breast
22	chr15:59246000-59249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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