Variant report

Variant	rs12905081
Chromosome Location	chr15:59250000-59250001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59249330..59250119-chr15:59784856..59785723,2	K562	blood:
2	chr15:59244376..59246814-chr15:59247299..59251469,3	MCF-7	breast:
3	chr15:58520038..58520592-chr15:59249453..59250225,3	K562	blood:
4	chr15:59223706..59226061-chr15:59247333..59250101,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10162914	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633839	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11637118	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11855243	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12905056	1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916216	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3985721	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774319	0.87[CEU][hapmap];0.83[CHB][hapmap]
rs6416469	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs8037673	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8038504	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59245400-59255000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:59245800-59255000	Weak transcription	HMEC	breast
3	chr15:59249400-59250000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr15:59249400-59250000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:59249400-59250000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:59249400-59250000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:59249400-59250000	Enhancers	Primary B cells from peripheral blood	blood
8	chr15:59249400-59250000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:59249400-59250000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:59249400-59250000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:59249400-59250000	Enhancers	Brain Angular Gyrus	brain
12	chr15:59249400-59250000	Enhancers	A549	lung
13	chr15:59249400-59250000	Enhancers	Dnd41	blood
14	chr15:59249400-59250000	Enhancers	K562	blood
15	chr15:59249400-59250200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:59249400-59250200	Enhancers	GM12878-XiMat	blood
17	chr15:59249600-59250000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:59249600-59250000	Enhancers	Primary B cells from cord blood	blood
19	chr15:59249600-59250000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr15:59249600-59250000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:59249600-59250000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr15:59249600-59250000	Enhancers	Adipose Nuclei	Adipose
23	chr15:59249600-59250000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:59249600-59250000	Enhancers	Gastric	stomach
25	chr15:59249600-59250000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:59249800-59250000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:59249800-59250000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr15:59249800-59250000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:59249800-59250000	Enhancers	Brain Cingulate Gyrus	brain
30	chr15:59249800-59250000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr15:59249800-59250000	Enhancers	Spleen	Spleen
32	chr15:59249800-59250000	Enhancers	NHLF	lung
33	chr15:59249800-59250000	Enhancers	Osteobl	bone
34	chr15:59249800-59250200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:59249800-59250200	Enhancers	Brain Hippocampus Middle	brain
36	chr15:59249800-59250200	Flanking Active TSS	Hela-S3	cervix
37	chr15:59249800-59250200	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr15:59249800-59250200	Enhancers	NHDF-Ad	bronchial
39	chr15:59249800-59254400	Weak transcription	Stomach Mucosa	stomach
40	chr15:59250000-59250800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:59250000-59254400	Weak transcription	A549	lung
42	chr15:59250000-59254800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:59250000-59255000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:59250000-59255000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:59250000-59255000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:59250000-59255000	Weak transcription	Osteobl	bone

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