Variant report

Variant	rs11637341
Chromosome Location	chr15:41955825-41955826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41953002..41954579-chr15:41954789..41956484,2	MCF-7	breast:
2	chr15:41953663..41957556-chr15:41966682..41969969,3	K562	blood:
3	chr15:41954590..41956853-chr15:41972603..41974738,2	K562	blood:
4	chr15:41954547..41956323-chr15:41964116..41966547,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11070343	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1107858	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11632424	0.80[EUR][1000 genomes]
rs11634956	0.81[ASN][1000 genomes]
rs12440747	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16971976	0.93[ASN][1000 genomes]
rs17677199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17677991	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17678138	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17678552	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17678767	0.80[EUR][1000 genomes]
rs17734856	0.88[EUR][1000 genomes]
rs2004162	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577960	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28444909	0.95[EUR][1000 genomes]
rs28556632	0.93[ASN][1000 genomes]
rs28700954	0.81[ASN][1000 genomes]
rs28701757	0.81[EUR][1000 genomes]
rs28754734	0.81[EUR][1000 genomes]
rs28810086	0.93[ASN][1000 genomes]
rs28850384	0.93[ASN][1000 genomes]
rs4924570	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62002066	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62003900	0.93[ASN][1000 genomes]
rs9920903	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11637341	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41954200-41962600	Weak transcription	Spleen	Spleen
2	chr15:41954400-41961600	Weak transcription	Gastric	stomach
3	chr15:41954400-41964600	Weak transcription	Lung	lung
4	chr15:41954400-41970600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:41954400-41978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:41954400-41982800	Weak transcription	Small Intestine	intestine
7	chr15:41954600-41956400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:41954600-41957400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:41954600-41957400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:41954600-41957600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:41954600-41957600	Weak transcription	Pancreas	Pancrea
12	chr15:41954600-41958200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:41954600-41958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:41954600-41958400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:41954600-41958600	Weak transcription	NHLF	lung
16	chr15:41954600-41958800	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:41954600-41960400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:41954600-41961000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:41954600-41961000	Weak transcription	Fetal Thymus	thymus
20	chr15:41954600-41961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:41954600-41961200	Weak transcription	Aorta	Aorta
22	chr15:41954600-41961200	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:41954600-41961400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:41954600-41961400	Weak transcription	Ovary	ovary
25	chr15:41954600-41961600	Weak transcription	Esophagus	oesophagus
26	chr15:41954600-41961600	Weak transcription	Placenta	Placenta
27	chr15:41954600-41961600	Weak transcription	Right Atrium	heart
28	chr15:41954600-41961600	Weak transcription	Right Ventricle	heart
29	chr15:41954600-41961800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:41954600-41964000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:41954600-41964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:41954600-41964200	Weak transcription	Fetal Stomach	stomach
33	chr15:41954600-41964800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:41954600-41965600	Weak transcription	Left Ventricle	heart
35	chr15:41954600-41976200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:41954600-41983800	Weak transcription	Thymus	Thymus
37	chr15:41954600-42001000	Weak transcription	Colonic Mucosa	Colon
38	chr15:41954800-41956000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:41954800-41956200	Weak transcription	A549	lung
40	chr15:41954800-41956400	Enhancers	Primary B cells from cord blood	blood
41	chr15:41954800-41956400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:41954800-41956600	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:41954800-41956800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr15:41954800-41957000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:41954800-41958200	Weak transcription	NH-A	brain
46	chr15:41954800-41958400	Weak transcription	HSMM	muscle
47	chr15:41954800-41958400	Weak transcription	NHDF-Ad	bronchial
48	chr15:41954800-41958400	Weak transcription	NHEK	skin
49	chr15:41954800-41958400	Weak transcription	Osteobl	bone
50	chr15:41954800-41958600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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