Variant report

Variant	rs11637647
Chromosome Location	chr15:50467155-50467156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50458824..50460746-chr15:50465947..50468257,2	MCF-7	breast:
2	chr15:50464723..50468254-chr15:50470192..50472116,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10519262	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11070751	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11070753	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11632133	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11634271	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12439182	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12443171	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12901981	0.85[EUR][1000 genomes]
rs12915230	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12915987	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414025	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34146758	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4502159	1.00[ASN][1000 genomes]
rs4775865	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5026421	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67251119	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7171888	0.84[EUR][1000 genomes]
rs7402755	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8041124	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs933854	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904209	chr15:50444824-50482133	Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50461600-50472400	Weak transcription	Hela-S3	cervix

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