Variant report

Variant	rs933854
Chromosome Location	chr15:50436828-50436829
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50433897..50436991-chr15:50437166..50439975,3	MCF-7	breast:
2	chr15:50429608..50431277-chr15:50435108..50437577,2	K562	blood:
3	chr15:50436327..50442259-chr15:50645496..50648593,7	MCF-7	breast:
4	chr15:50436281..50440300-chr15:50607004..50610746,4	MCF-7	breast:
5	chr15:50431663..50433550-chr15:50434426..50437064,2	K562	blood:
6	chr15:50435789..50439310-chr15:50472898..50476135,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140284	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000104043	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10152738	0.81[ASN][1000 genomes]
rs10519262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070750	0.81[ASN][1000 genomes]
rs11070751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070752	0.84[ASN][1000 genomes]
rs11070753	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631433	0.80[ASN][1000 genomes]
rs11632133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634271	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637647	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12439182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442998	0.81[ASN][1000 genomes]
rs12443171	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591791	0.81[ASN][1000 genomes]
rs12901981	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12902997	0.81[ASN][1000 genomes]
rs12904370	0.95[AFR][1000 genomes]
rs12915230	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915287	0.81[ASN][1000 genomes]
rs12915987	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2414025	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28403229	0.81[ASN][1000 genomes]
rs34146758	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35030867	0.90[AFR][1000 genomes]
rs4774556	0.81[ASN][1000 genomes]
rs4775865	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5025069	0.81[ASN][1000 genomes]
rs5026421	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67251119	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7165446	0.81[ASN][1000 genomes]
rs7171888	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7176805	0.95[AFR][1000 genomes]
rs7402755	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8023371	0.82[ASN][1000 genomes]
rs8037555	0.81[ASN][1000 genomes]
rs8041124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50429000-50437000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:50429000-50437600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr15:50430600-50437000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:50430600-50442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:50430800-50437000	Weak transcription	Osteobl	bone
6	chr15:50434400-50437600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:50434400-50438800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:50434600-50439400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:50435400-50437000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:50436000-50438200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr15:50436400-50437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50436800-50437200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr15:50436800-50437400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:50436800-50437600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:50436800-50437600	Enhancers	NHLF	lung
16	chr15:50436800-50438000	Enhancers	NHDF-Ad	bronchial
17	chr15:50436800-50438200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:50436800-50439200	Enhancers	Hela-S3	cervix

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