Variant report

Variant	rs35030867
Chromosome Location	chr15:50409400-50409401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519262	0.90[AFR][1000 genomes]
rs11070751	0.90[AFR][1000 genomes]
rs11638799	0.81[ASN][1000 genomes]
rs11638841	0.82[ASN][1000 genomes]
rs12439182	0.90[AFR][1000 genomes]
rs12901981	0.90[AFR][1000 genomes]
rs12904370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915042	0.81[ASN][1000 genomes]
rs4775854	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171888	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7176805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs933854	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50403800-50411200	Weak transcription	Thymus	Thymus
2	chr15:50405600-50410800	Weak transcription	K562	blood
3	chr15:50406800-50409600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:50407800-50411200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:50408200-50409600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:50408800-50410600	Active TSS	Primary hematopoietic stem cells	blood
7	chr15:50408800-50410600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:50408800-50411400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:50409000-50410000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:50409000-50411400	Weak transcription	Osteobl	bone
11	chr15:50409000-50411600	Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:50409000-50411600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:50409200-50409800	Enhancers	Primary B cells from cord blood	blood
14	chr15:50409200-50410600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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