Variant report

Variant	rs4775854
Chromosome Location	chr15:50413905-50413906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11638799	0.81[ASN][1000 genomes]
rs11638841	0.82[ASN][1000 genomes]
rs12901981	0.80[EUR][1000 genomes]
rs12904370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915042	0.81[ASN][1000 genomes]
rs35030867	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171888	0.82[EUR][1000 genomes]
rs7176805	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50411800-50416400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr15:50411800-50417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:50411800-50418400	Weak transcription	A549	lung
4	chr15:50412000-50415800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:50412000-50416800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:50412000-50417000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:50412400-50415600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:50412400-50416400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:50412400-50419400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:50412600-50419800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr15:50412800-50414600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:50412800-50415200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:50413000-50414400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:50413600-50414600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:50413800-50414600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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