Variant report

Variant	rs11637840
Chromosome Location	chr15:59625931-59625932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59624048..59626995-chr15:59627954..59630263,2	K562	blood:
2	chr15:59625699..59628162-chr15:59663501..59666309,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157470	Chromatin interaction
ENSG00000157483	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10851653	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11071429	0.82[EUR][1000 genomes]
rs11071430	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11071431	0.82[EUR][1000 genomes]
rs11071432	0.85[ASN][1000 genomes]
rs11071433	0.84[ASN][1000 genomes]
rs11630796	0.87[ASN][1000 genomes]
rs11631146	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11631451	0.85[ASN][1000 genomes]
rs11632346	0.90[ASN][1000 genomes]
rs11635849	0.85[ASN][1000 genomes]
rs11639217	0.88[ASN][1000 genomes]
rs11854356	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11854697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855765	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11858264	0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11858313	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12050546	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12441388	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12442217	0.91[ASN][1000 genomes]
rs12593179	0.81[EUR][1000 genomes]
rs12593355	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12595769	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12899138	0.85[ASN][1000 genomes]
rs12902525	0.82[EUR][1000 genomes]
rs12905793	0.84[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12911676	0.93[ASN][1000 genomes]
rs1580426	0.94[ASN][1000 genomes]
rs16941337	0.82[EUR][1000 genomes]
rs16941369	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17236578	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17236585	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17302351	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2170895	0.95[ASN][1000 genomes]
rs28363891	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28380572	0.94[ASN][1000 genomes]
rs28572451	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774327	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4775158	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59107240	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61692274	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6494101	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6494102	0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6494105	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs66595425	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66991143	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67017396	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67366717	0.82[EUR][1000 genomes]
rs67498027	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67552459	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7162228	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7163650	0.81[EUR][1000 genomes]
rs7164494	0.82[EUR][1000 genomes]
rs7168074	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7168263	0.81[EUR][1000 genomes]
rs7170390	0.82[EUR][1000 genomes]
rs7171696	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7173362	0.84[ASN][1000 genomes]
rs7177871	0.82[EUR][1000 genomes]
rs7177984	0.81[EUR][1000 genomes]
rs7178041	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs73426976	0.82[EUR][1000 genomes]
rs8024396	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8024879	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8024906	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8025242	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8025360	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8031423	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033217	0.81[EUR][1000 genomes]
rs8033386	0.82[EUR][1000 genomes]
rs8039327	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8041804	0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs965929	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv457175	chr15:59609753-59681214	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv569603	chr15:59609753-59681214	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv471246	chr15:59610743-59681214	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1794268	chr15:59614874-59637355	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv904274	chr15:59623576-59689378	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59600000-59627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:59606800-59631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:59610200-59627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:59613800-59626000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:59618200-59626800	Weak transcription	Brain Angular Gyrus	brain
6	chr15:59619000-59626200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:59619000-59626400	Enhancers	Primary B cells from peripheral blood	blood
8	chr15:59621200-59626800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:59621200-59627800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:59621600-59626000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:59622000-59627400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:59622200-59627400	Weak transcription	Fetal Heart	heart
13	chr15:59622600-59627000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:59622600-59631800	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:59622800-59626800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:59623200-59626600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:59623200-59628400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:59623200-59631400	Weak transcription	Right Ventricle	heart
19	chr15:59623200-59662800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:59623400-59626800	Weak transcription	HSMM	muscle
21	chr15:59623400-59626800	Weak transcription	NH-A	brain
22	chr15:59623400-59630800	Weak transcription	Left Ventricle	heart
23	chr15:59623400-59641200	Weak transcription	Aorta	Aorta
24	chr15:59623400-59643800	Weak transcription	Lung	lung
25	chr15:59623600-59626000	Weak transcription	Fetal Kidney	kidney
26	chr15:59623600-59627800	Weak transcription	HSMMtube	muscle
27	chr15:59623600-59636400	Weak transcription	Psoas Muscle	Psoas
28	chr15:59623800-59626000	Weak transcription	Small Intestine	intestine
29	chr15:59624200-59626800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:59624200-59627000	Weak transcription	Osteobl	bone
31	chr15:59624400-59626800	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:59624400-59628200	Enhancers	HepG2	liver
33	chr15:59624400-59637800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:59624600-59627000	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr15:59624600-59627600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:59624600-59650000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:59624800-59626800	Weak transcription	Brain Substantia Nigra	brain
38	chr15:59624800-59627200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:59624800-59627600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:59624800-59631400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:59625000-59626400	Enhancers	Spleen	Spleen
42	chr15:59625000-59627600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:59625000-59636600	Weak transcription	Fetal Intestine Small	intestine
44	chr15:59625200-59626600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:59625200-59627200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:59625400-59626400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:59625400-59626800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:59625400-59627600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:59625400-59628000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:59625400-59628200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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