Variant report

Variant	rs67552459
Chromosome Location	chr15:59610756-59610757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11071428	0.85[ASN][1000 genomes]
rs11071429	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11071430	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11071431	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11637840	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11854356	0.84[AMR][1000 genomes]
rs11854697	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11855765	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11858313	0.90[AMR][1000 genomes]
rs12050546	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12593179	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12593355	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12595769	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12902525	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16941337	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17236578	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17236585	0.90[AMR][1000 genomes]
rs17302351	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28363891	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28572451	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4774327	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4775158	0.82[AMR][1000 genomes]
rs59107240	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66595425	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66991143	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67017396	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67366717	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67498027	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7162228	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7163650	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7164494	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7168074	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7168263	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7170390	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7171696	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177871	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7177984	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73426976	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8025242	0.83[AMR][1000 genomes]
rs8025360	0.88[AMR][1000 genomes]
rs8033217	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033386	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8039327	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv457175	chr15:59609753-59681214	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv569603	chr15:59609753-59681214	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv471246	chr15:59610743-59681214	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59600000-59627400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:59606400-59614000	Weak transcription	Fetal Intestine Small	intestine
3	chr15:59606600-59621200	Weak transcription	Fetal Kidney	kidney
4	chr15:59606800-59615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:59606800-59621400	Weak transcription	Gastric	stomach
6	chr15:59606800-59623000	Weak transcription	Lung	lung
7	chr15:59606800-59631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:59607000-59620200	Weak transcription	Esophagus	oesophagus
9	chr15:59607600-59611000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:59608600-59615000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:59608600-59619000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:59608600-59619400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:59608600-59621400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:59608600-59621400	Weak transcription	Ovary	ovary
15	chr15:59608600-59622600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:59608600-59623200	Weak transcription	Psoas Muscle	Psoas
17	chr15:59608600-59623400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:59608600-59625800	Weak transcription	HMEC	breast
19	chr15:59608800-59621400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:59609400-59610800	ZNF genes & repeats	GM12878-XiMat	blood
21	chr15:59609600-59619000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr15:59609800-59620200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:59609800-59620400	Weak transcription	HSMM	muscle
24	chr15:59609800-59620800	Weak transcription	NH-A	brain
25	chr15:59609800-59621400	Weak transcription	Pancreas	Pancrea
26	chr15:59610000-59611200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:59610000-59611200	Strong transcription	NHEK	skin
28	chr15:59610000-59619000	Weak transcription	Stomach Mucosa	stomach
29	chr15:59610200-59613200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:59610200-59617600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:59610200-59620400	Weak transcription	Osteobl	bone
32	chr15:59610200-59623000	Weak transcription	Left Ventricle	heart
33	chr15:59610200-59627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:59610400-59617400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:59610600-59610800	Weak transcription	Hela-S3	cervix
36	chr15:59610600-59611000	Strong transcription	A549	lung
37	chr15:59610600-59613400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:59610600-59616200	Weak transcription	NHDF-Ad	bronchial
39	chr15:59610600-59620400	Weak transcription	Fetal Heart	heart
40	chr15:59610600-59623000	Weak transcription	Aorta	Aorta

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