Variant report

Variant	rs11640649
Chromosome Location	chr16:81691629-81691630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81683532..81686798-chr16:81690225..81693159,3	MCF-7	breast:
2	chr16:81691410..81694204-chr16:81695773..81697443,2	MCF-7	breast:
3	chr16:81563450..81565897-chr16:81690369..81692226,2	K562	blood:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2966105	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81676800-81695800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:81681400-81694600	Weak transcription	HUVEC	blood vessel
3	chr16:81682400-81722400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr16:81683400-81693800	Strong transcription	Primary B cells from cord blood	blood
5	chr16:81683600-81694400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:81683600-81715600	Strong transcription	Primary T cells from cord blood	blood
7	chr16:81683800-81721800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr16:81684200-81693600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:81684400-81699000	Weak transcription	Aorta	Aorta
10	chr16:81684400-81702400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr16:81684400-81722200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr16:81684400-81722200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr16:81684800-81705400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr16:81685000-81700800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr16:81685200-81701000	Strong transcription	Dnd41	blood
16	chr16:81685400-81692000	Weak transcription	Brain Angular Gyrus	brain
17	chr16:81685400-81703600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr16:81685600-81694600	Weak transcription	Fetal Heart	heart
19	chr16:81685800-81701000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr16:81686200-81692600	Weak transcription	Brain Anterior Caudate	brain
21	chr16:81686200-81705800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr16:81686400-81691800	Weak transcription	Brain Substantia Nigra	brain
23	chr16:81686400-81694400	Weak transcription	Small Intestine	intestine
24	chr16:81686600-81692000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr16:81686600-81697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr16:81686600-81715400	Strong transcription	Placenta	Placenta
27	chr16:81686600-81721600	Weak transcription	NH-A	brain
28	chr16:81686600-81725000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr16:81687000-81691800	Weak transcription	Brain Hippocampus Middle	brain
30	chr16:81687200-81691800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr16:81687200-81692000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr16:81687200-81692400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:81687200-81694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr16:81687200-81699200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr16:81687200-81704800	Weak transcription	Fetal Brain Male	brain
36	chr16:81687400-81692000	Weak transcription	Fetal Brain Female	brain
37	chr16:81687400-81692200	Enhancers	Colon Smooth Muscle	Colon
38	chr16:81687400-81692400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr16:81687400-81694200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr16:81687400-81694400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr16:81687400-81706800	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr16:81687600-81691800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr16:81687600-81694400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr16:81687800-81693000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr16:81687800-81695200	Strong transcription	Fetal Thymus	thymus
46	chr16:81688000-81691800	Enhancers	Ovary	ovary
47	chr16:81688000-81693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr16:81688200-81692200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:81688400-81693200	Weak transcription	Osteobl	bone
50	chr16:81688400-81693400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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