Variant report

Variant	rs2966105
Chromosome Location	chr16:81561022-81561023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81560059..81563945-chr16:81564065..81567469,4	MCF-7	breast:
2	chr16:81478269..81480655-chr16:81559515..81562675,4	MCF-7	breast:
3	chr16:81560475..81564171-chr16:81564775..81571060,7	K562	blood:
4	chr16:81553683..81555515-chr16:81559365..81561780,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11640649	1.00[CHB][hapmap]
rs11863508	1.00[JPT][hapmap]
rs2925984	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2925985	0.92[EUR][1000 genomes]
rs2925988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2927317	0.92[EUR][1000 genomes]
rs2966107	0.92[EUR][1000 genomes]
rs2966108	0.92[EUR][1000 genomes]
rs2966109	0.84[EUR][1000 genomes]
rs2966110	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv457576	chr16:81525637-81579433	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573360	chr16:81525637-81579433	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81547400-81571600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr16:81547600-81564400	Weak transcription	Fetal Kidney	kidney
3	chr16:81547800-81571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr16:81548000-81564200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr16:81548000-81564200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:81548800-81567400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:81551400-81563800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr16:81552200-81564600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr16:81552800-81563400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr16:81553200-81562400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr16:81553600-81565400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr16:81553800-81566200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr16:81555400-81563200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr16:81555400-81576800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr16:81555800-81572200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr16:81556000-81590000	Weak transcription	Dnd41	blood
17	chr16:81556200-81568000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:81556200-81577600	Weak transcription	GM12878-XiMat	blood
19	chr16:81556600-81562400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr16:81556600-81563800	Enhancers	HMEC	breast
21	chr16:81556800-81571400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr16:81557400-81565200	Weak transcription	Primary T cells from cord blood	blood
23	chr16:81557600-81561800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr16:81557800-81562000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr16:81557800-81564200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr16:81558000-81565600	Weak transcription	Thymus	Thymus
27	chr16:81558200-81563800	Enhancers	Esophagus	oesophagus
28	chr16:81558200-81564400	Weak transcription	Brain Angular Gyrus	brain
29	chr16:81558400-81562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:81558400-81562800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:81559200-81561200	Enhancers	Liver	Liver
32	chr16:81559200-81561200	Enhancers	Duodenum Mucosa	Duodenum
33	chr16:81559200-81561400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr16:81559200-81561600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr16:81559200-81562000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr16:81559200-81562400	Genic enhancers	HepG2	liver
37	chr16:81559400-81561400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr16:81559400-81561600	Enhancers	Fetal Heart	heart
39	chr16:81559600-81561400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr16:81559600-81561400	Enhancers	HUVEC	blood vessel
41	chr16:81559600-81561400	Enhancers	NH-A	brain
42	chr16:81559600-81561600	Enhancers	Adipose Nuclei	Adipose
43	chr16:81559600-81561600	Enhancers	Fetal Lung	lung
44	chr16:81559600-81561600	Enhancers	HSMM	muscle
45	chr16:81559600-81561600	Enhancers	NHDF-Ad	bronchial
46	chr16:81559600-81562400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr16:81559800-81561400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr16:81559800-81561600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr16:81559800-81561600	Enhancers	Small Intestine	intestine
50	chr16:81559800-81562600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links