Variant report

Variant	rs1164085
Chromosome Location	chr3:109424275-109424276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1164063	1.00[AFR][1000 genomes]
rs1528907	1.00[AFR][1000 genomes]
rs1624891	1.00[AFR][1000 genomes]
rs1711323	0.90[AFR][1000 genomes]
rs1729643	1.00[AFR][1000 genomes]
rs1729644	1.00[AFR][1000 genomes]
rs1732205	1.00[AFR][1000 genomes]
rs1733260	1.00[AFR][1000 genomes]
rs938546	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv965391	chr3:109419757-109431296	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109423600-109426400	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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