Variant report

Variant	rs1711323
Chromosome Location	chr3:109456487-109456488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1164063	0.90[AFR][1000 genomes]
rs1164085	0.90[AFR][1000 genomes]
rs1528907	0.90[AFR][1000 genomes]
rs1624891	0.90[AFR][1000 genomes]
rs1729643	0.90[AFR][1000 genomes]
rs1729644	0.90[AFR][1000 genomes]
rs1732205	0.90[AFR][1000 genomes]
rs1733260	0.90[AFR][1000 genomes]
rs938546	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460815	chr3:109447463-109484302	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv591269	chr3:109447463-109496029	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109455800-109456600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:109456000-109456600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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