Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10083732	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10083735	0.97[EUR][1000 genomes]
rs10083736	0.97[EUR][1000 genomes]
rs11076272	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11076273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11645316	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12444886	0.96[EUR][1000 genomes]
rs12595974	0.91[YRI][hapmap]
rs12598527	1.00[YRI][hapmap]
rs12600201	1.00[YRI][hapmap]
rs12600206	1.00[YRI][hapmap]
rs12926870	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12928758	0.94[EUR][1000 genomes]
rs1615326	0.81[YRI][hapmap]
rs34069258	0.85[EUR][1000 genomes]
rs36098667	0.96[EUR][1000 genomes]
rs59521747	0.95[ASN][1000 genomes]
rs7194245	0.97[EUR][1000 genomes]
rs7199076	0.97[EUR][1000 genomes]
rs7201840	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7203783	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046516	0.97[EUR][1000 genomes]
rs8052902	0.90[EUR][1000 genomes]
rs9941124	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv9450	chr16:58846210-58848206	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11641090	NLRC5	cis	cerebellum	SCAN
rs11641090	MT4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58843600-58847800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:58843600-58848400	Weak transcription	NHEK	skin
3	chr16:58844400-58848400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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