Variant report

Variant	rs34069258
Chromosome Location	chr16:58862589-58862590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10083732	0.84[EUR][1000 genomes]
rs10083735	0.84[EUR][1000 genomes]
rs10083736	0.84[EUR][1000 genomes]
rs11076272	0.85[EUR][1000 genomes]
rs11076273	0.85[EUR][1000 genomes]
rs11641090	0.85[EUR][1000 genomes]
rs12444886	0.83[EUR][1000 genomes]
rs12926870	0.83[EUR][1000 genomes]
rs12928758	0.81[EUR][1000 genomes]
rs36098667	0.83[EUR][1000 genomes]
rs7194245	0.84[EUR][1000 genomes]
rs7199076	0.84[EUR][1000 genomes]
rs8046516	0.84[EUR][1000 genomes]
rs9941124	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58862000-58864400	Enhancers	Fetal Brain Male	brain
2	chr16:58862400-58863000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:58862400-58863000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr16:58862400-58863200	Enhancers	Rectal Smooth Muscle	rectum
5	chr16:58862400-58863400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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