Variant report

Variant	rs11641113
Chromosome Location	chr16:71806065-71806066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71790780..71793408-chr16:71805214..71808324,3	K562	blood:
2	chr16:71805065..71807022-chr16:71841800..71844542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223224	Chromatin interaction
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11075903	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11640830	0.85[ASN][1000 genomes]
rs11642526	0.92[ASN][1000 genomes]
rs11642529	1.00[ASN][1000 genomes]
rs11645704	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11645725	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11648483	0.85[ASN][1000 genomes]
rs11861296	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12149460	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12445161	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12447094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12448022	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12919271	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928939	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12933007	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12935106	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34053338	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34358623	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34531032	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34731378	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34998650	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35706035	0.89[ASN][1000 genomes]
rs71386932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197104	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202840	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8049163	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8051878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8057568	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	esv1819402	chr16:71755852-71816899	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	n/a
5	esv1815957	chr16:71790812-71816899	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71762200-71811400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71763200-71812600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr16:71763600-71812400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:71764000-71813000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr16:71770800-71810600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:71770800-71813800	Strong transcription	Liver	Liver
7	chr16:71771000-71812200	Strong transcription	Placenta	Placenta
8	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:71780000-71821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr16:71783800-71820600	Weak transcription	Psoas Muscle	Psoas
11	chr16:71784000-71811200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:71785400-71808800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr16:71786600-71809800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr16:71788000-71806600	Weak transcription	Stomach Mucosa	stomach
15	chr16:71792600-71806600	Weak transcription	Fetal Brain Male	brain
16	chr16:71792800-71809600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr16:71792800-71811000	Weak transcription	Small Intestine	intestine
18	chr16:71793200-71808800	Strong transcription	Fetal Intestine Large	intestine
19	chr16:71793200-71830400	Weak transcription	Fetal Heart	heart
20	chr16:71794000-71808600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr16:71797000-71807200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr16:71797000-71807200	Weak transcription	Esophagus	oesophagus
23	chr16:71797000-71807200	Weak transcription	Gastric	stomach
24	chr16:71797000-71807200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr16:71797000-71807200	Weak transcription	NHLF	lung
26	chr16:71797000-71823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:71797200-71807200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr16:71797200-71807200	Weak transcription	Aorta	Aorta
29	chr16:71797200-71807200	Weak transcription	Spleen	Spleen
30	chr16:71797200-71807600	Weak transcription	Right Ventricle	heart
31	chr16:71797200-71811200	Weak transcription	Pancreas	Pancrea
32	chr16:71797400-71812800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr16:71798400-71822200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr16:71798600-71806600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr16:71799000-71810200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr16:71799600-71806400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr16:71799800-71807400	Weak transcription	Colonic Mucosa	Colon
38	chr16:71800400-71810600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr16:71801000-71815600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr16:71801200-71809400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr16:71801400-71808400	Strong transcription	Fetal Stomach	stomach
42	chr16:71801400-71814800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:71801600-71811200	Weak transcription	NHEK	skin
44	chr16:71801800-71807200	Weak transcription	Brain Angular Gyrus	brain
45	chr16:71801800-71808600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr16:71801800-71811400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr16:71802000-71806400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr16:71802000-71808400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr16:71802000-71821400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr16:71802600-71806400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links