Variant report

Variant	rs11645725
Chromosome Location	chr16:71826883-71826884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71824921..71831111-chr16:71841037..71844179,8	MCF-7	breast:
2	chr16:71825737..71827920-chr16:71925001..71926624,2	MCF-7	breast:
3	chr16:71823922..71825442-chr16:71825823..71828696,2	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11075903	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11641113	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11645704	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11861296	0.86[EUR][1000 genomes]
rs12149460	0.86[EUR][1000 genomes]
rs12445161	0.84[EUR][1000 genomes]
rs12447094	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12448022	0.83[EUR][1000 genomes]
rs12919271	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12928939	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12933007	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12935106	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34053338	0.86[EUR][1000 genomes]
rs34358623	0.83[EUR][1000 genomes]
rs34531032	0.84[EUR][1000 genomes]
rs34731378	0.85[EUR][1000 genomes]
rs34998650	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71386932	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7197104	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7202840	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8049163	0.83[EUR][1000 genomes]
rs8051878	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8057568	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71793200-71830400	Weak transcription	Fetal Heart	heart
3	chr16:71808000-71829800	Weak transcription	NHLF	lung
4	chr16:71808400-71828800	Weak transcription	HSMMtube	muscle
5	chr16:71816000-71840400	Weak transcription	Fetal Kidney	kidney
6	chr16:71821400-71840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr16:71823200-71829000	Weak transcription	Colon Smooth Muscle	Colon
8	chr16:71823200-71829800	Weak transcription	Psoas Muscle	Psoas
9	chr16:71823200-71830000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr16:71823200-71832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:71823200-71835200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr16:71823200-71840400	Weak transcription	HUVEC	blood vessel
13	chr16:71823200-71841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:71823400-71827200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:71823400-71827200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr16:71823400-71828200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:71823400-71828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr16:71823400-71829600	Weak transcription	Placenta	Placenta
19	chr16:71823400-71829800	Weak transcription	Fetal Lung	lung
20	chr16:71823400-71829800	Weak transcription	Fetal Thymus	thymus
21	chr16:71823400-71830000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:71823400-71830200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:71823400-71831600	Weak transcription	Fetal Brain Female	brain
24	chr16:71823400-71832000	Weak transcription	Gastric	stomach
25	chr16:71823400-71833000	Weak transcription	HMEC	breast
26	chr16:71823400-71833200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr16:71823400-71834800	Weak transcription	Small Intestine	intestine
28	chr16:71823400-71836000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr16:71823400-71836800	Weak transcription	Brain Germinal Matrix	brain
30	chr16:71823400-71837400	Weak transcription	HSMM	muscle
31	chr16:71823400-71838600	Weak transcription	Brain Substantia Nigra	brain
32	chr16:71823400-71839800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:71823400-71840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:71823400-71840000	Weak transcription	Brain Angular Gyrus	brain
35	chr16:71823400-71840000	Weak transcription	Brain Anterior Caudate	brain
36	chr16:71823400-71840000	Weak transcription	K562	blood
37	chr16:71823400-71840200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr16:71823400-71840200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr16:71823400-71840400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr16:71823400-71840400	Weak transcription	Fetal Brain Male	brain
41	chr16:71823400-71840400	Weak transcription	NH-A	brain
42	chr16:71823400-71841000	Weak transcription	Colonic Mucosa	Colon
43	chr16:71823400-71841400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr16:71823400-71841400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr16:71823400-71841400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr16:71823400-71841600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr16:71823400-71841600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr16:71823400-71841600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr16:71823400-71841600	Weak transcription	Aorta	Aorta
50	chr16:71823400-71841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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