Variant report
Variant | rs11641811 |
---|---|
Chromosome Location | chr16:71635836-71635837 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:71634121..71636611-chr16:71640952..71642935,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1544808 | 0.84[ASN][1000 genomes] |
rs1799881 | 0.85[ASN][1000 genomes] |
rs2303226 | 0.85[ASN][1000 genomes] |
rs34692271 | 0.86[ASN][1000 genomes] |
rs4788808 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4788815 | 0.96[ASN][1000 genomes] |
rs72797752 | 0.82[ASN][1000 genomes] |
rs72797754 | 0.83[ASN][1000 genomes] |
rs72797767 | 0.85[ASN][1000 genomes] |
rs72797770 | 0.85[ASN][1000 genomes] |
rs72797773 | 0.85[ASN][1000 genomes] |
rs72797783 | 0.87[ASN][1000 genomes] |
rs72797794 | 0.86[ASN][1000 genomes] |
rs72799815 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
2 | nsv1063338 | chr16:71612346-71752968 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | esv3430225 | chr16:71633500-71661205 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:71635200-71640600 | Weak transcription | HepG2 | liver |