Variant report

Variant	rs2303226
Chromosome Location	chr16:71604469-71604470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
TAT	TF binding region
ENSG00000198650	Chromatin interaction
ENSG00000260886	Chromatin interaction
ENSG00000252339	Chromatin interaction
ENSG00000157429	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11641811	0.85[ASN][1000 genomes]
rs1544808	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1799881	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34692271	0.97[ASN][1000 genomes]
rs4788808	0.90[ASN][1000 genomes]
rs4788815	0.87[ASN][1000 genomes]
rs72797752	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72797754	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72797767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797783	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72797794	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72799815	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71599600-71605600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr16:71599600-71607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:71600600-71606000	Weak transcription	Fetal Intestine Large	intestine
4	chr16:71600600-71606000	Weak transcription	A549	lung
5	chr16:71602400-71615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:71603600-71604600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:71603600-71604600	Genic enhancers	Liver	Liver
8	chr16:71603600-71605800	Weak transcription	Fetal Intestine Small	intestine
9	chr16:71604000-71604800	Genic enhancers	HepG2	liver
10	chr16:71604200-71604600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr16:71604200-71604600	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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