Variant report

Variant	rs11643408
Chromosome Location	chr16:71359299-71359300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71321458..71323211-chr16:71358349..71360387,2	K562	blood:
2	chr16:71321443..71323211-chr16:71358111..71360387,2	K562	blood:

Variant related genes	Relation type
ENSG00000180917	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11642316	0.83[EUR][1000 genomes]
rs11644378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11645087	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11648802	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12924136	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12925681	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs146873	0.91[ASN][1000 genomes]
rs171016	0.91[ASN][1000 genomes]
rs17270785	0.91[ASN][1000 genomes]
rs173128	0.91[ASN][1000 genomes]
rs17343100	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1834044	0.91[ASN][1000 genomes]
rs184647	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs235992	0.91[ASN][1000 genomes]
rs235995	0.91[ASN][1000 genomes]
rs235998	0.91[ASN][1000 genomes]
rs236003	0.91[ASN][1000 genomes]
rs236011	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs236014	0.91[ASN][1000 genomes]
rs236015	0.84[ASN][1000 genomes]
rs236016	0.91[ASN][1000 genomes]
rs3094446	0.91[ASN][1000 genomes]
rs3114641	0.91[ASN][1000 genomes]
rs34036373	0.83[ASN][1000 genomes]
rs34364189	0.91[ASN][1000 genomes]
rs34395100	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34399179	0.91[ASN][1000 genomes]
rs34538430	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34907542	0.95[ASN][1000 genomes]
rs35052014	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35157832	0.91[ASN][1000 genomes]
rs35269005	0.91[ASN][1000 genomes]
rs35635213	0.84[EUR][1000 genomes]
rs35794600	0.91[ASN][1000 genomes]
rs35839403	0.82[EUR][1000 genomes]
rs35897488	0.95[ASN][1000 genomes]
rs370875	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3743950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs430445	0.91[ASN][1000 genomes]
rs434108	0.91[ASN][1000 genomes]
rs443889	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs446245	1.00[JPT][hapmap]
rs66510446	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67275961	0.91[ASN][1000 genomes]
rs71403844	0.91[ASN][1000 genomes]
rs72795758	0.95[ASN][1000 genomes]
rs72795760	0.95[ASN][1000 genomes]
rs72795777	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3524542	chr16:71354751-71362249	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3524546	chr16:71355201-71362099	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3313397	chr16:71355730-71360767	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3524543	chr16:71355813-71360694	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3524545	chr16:71355836-71360609	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3524544	chr16:71355853-71360640	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3313398	chr16:71355923-71360567	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3524547	chr16:71355923-71360567	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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