Variant report

Variant	rs17343100
Chromosome Location	chr16:71379383-71379384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11642316	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11643408	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11644378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11645087	0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11648802	0.82[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12924136	0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12925681	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs146873	0.91[ASN][1000 genomes]
rs171016	0.91[ASN][1000 genomes]
rs17270785	0.91[ASN][1000 genomes]
rs173128	0.91[ASN][1000 genomes]
rs1834044	0.91[ASN][1000 genomes]
rs184647	0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1859088	0.82[ASW][hapmap]
rs2015813	0.82[ASW][hapmap]
rs235986	0.82[ASW][hapmap]
rs235989	0.82[ASW][hapmap]
rs235990	0.82[ASW][hapmap]
rs235992	0.91[ASN][1000 genomes]
rs235995	0.91[ASN][1000 genomes]
rs235998	0.91[ASN][1000 genomes]
rs236003	0.91[ASN][1000 genomes]
rs236008	0.82[ASW][hapmap]
rs236009	0.82[ASW][hapmap]
rs236011	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs236014	0.91[ASN][1000 genomes]
rs236015	0.83[ASN][1000 genomes]
rs236016	0.91[ASN][1000 genomes]
rs3094446	0.91[ASN][1000 genomes]
rs3114641	0.91[ASN][1000 genomes]
rs34036373	0.82[ASN][1000 genomes]
rs34364189	0.91[ASN][1000 genomes]
rs34395100	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34399179	0.91[ASN][1000 genomes]
rs34538430	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34907542	0.95[ASN][1000 genomes]
rs35052014	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35157832	0.91[ASN][1000 genomes]
rs35269005	0.91[ASN][1000 genomes]
rs35635213	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35794600	0.91[ASN][1000 genomes]
rs35839403	0.92[EUR][1000 genomes]
rs35897488	0.95[ASN][1000 genomes]
rs370875	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3743950	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4238976	1.00[YRI][hapmap]
rs430445	0.91[ASN][1000 genomes]
rs434108	0.91[ASN][1000 genomes]
rs443889	0.83[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs446245	0.82[ASW][hapmap];1.00[JPT][hapmap]
rs66510446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67275961	0.91[ASN][1000 genomes]
rs71403844	0.91[ASN][1000 genomes]
rs72795758	0.95[ASN][1000 genomes]
rs72795760	0.95[ASN][1000 genomes]
rs72795777	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71378400-71379400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:71378400-71379600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:71378400-71379800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71379000-71379400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:71379000-71379600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:71379000-71385200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:71379200-71379600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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