Variant report

Variant	rs11645641
Chromosome Location	chr16:82116771-82116772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82115526..82118305-chr16:82123989..82125939,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10514523	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1119933	0.82[EUR][1000 genomes]
rs1364287	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1559428	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1981878	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1981879	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62046326	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62046327	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7196807	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723012	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723013	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8191243	0.83[EUR][1000 genomes]
rs8191248	0.83[EUR][1000 genomes]
rs996751	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82097400-82116800	Weak transcription	Colonic Mucosa	Colon
2	chr16:82104800-82124400	Weak transcription	Fetal Stomach	stomach
3	chr16:82113000-82117000	Enhancers	HepG2	liver
4	chr16:82114800-82117200	Enhancers	HMEC	breast
5	chr16:82114800-82119400	Enhancers	Stomach Mucosa	stomach
6	chr16:82115000-82116800	Enhancers	NHEK	skin
7	chr16:82115000-82117200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82115000-82117200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr16:82115000-82117200	Enhancers	NHDF-Ad	bronchial
10	chr16:82115600-82116800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:82115600-82117400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr16:82115600-82117400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr16:82115800-82116800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:82115800-82117000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr16:82115800-82119200	Enhancers	Fetal Intestine Small	intestine
16	chr16:82115800-82119400	Enhancers	Fetal Intestine Large	intestine
17	chr16:82116000-82127400	Weak transcription	Gastric	stomach
18	chr16:82116200-82116800	Enhancers	HSMM	muscle
19	chr16:82116200-82117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:82116200-82117400	Enhancers	HSMMtube	muscle
21	chr16:82116400-82116800	Enhancers	NHLF	lung
22	chr16:82116400-82117400	Enhancers	NH-A	brain
23	chr16:82116400-82119200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr16:82116600-82116800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr16:82116600-82116800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr16:82116600-82117000	Enhancers	Small Intestine	intestine
27	chr16:82116600-82117800	Flanking Active TSS	Liver	Liver
28	chr16:82116600-82118000	Enhancers	Duodenum Mucosa	Duodenum
29	chr16:82116600-82118000	Strong transcription	Placenta	Placenta

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