Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10514523	0.87[CEU][hapmap];0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs10514529	0.85[JPT][hapmap]
rs11639839	0.83[CEU][hapmap]
rs11645641	0.82[EUR][1000 genomes]
rs11645754	0.84[CEU][hapmap]
rs1364287	0.82[CEU][hapmap];0.80[CHB][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1559428	0.81[EUR][1000 genomes]
rs1981878	0.83[EUR][1000 genomes]
rs1981879	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2955162	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4274431	0.80[CEU][hapmap]
rs62046326	0.81[EUR][1000 genomes]
rs62046327	0.81[EUR][1000 genomes]
rs7196807	0.83[EUR][1000 genomes]
rs723012	0.87[CEU][hapmap];0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs723013	0.91[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8191243	0.90[CEU][hapmap];0.80[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8191246	0.85[JPT][hapmap]
rs8191248	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs996751	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs996752	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82118000-82135800	Weak transcription	Pancreas	Pancrea
2	chr16:82118600-82134800	Weak transcription	Colonic Mucosa	Colon
3	chr16:82119200-82135800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:82122200-82134400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr16:82126000-82141400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:82131000-82134000	Strong transcription	Placenta	Placenta
7	chr16:82131600-82134000	Strong transcription	Fetal Intestine Large	intestine
8	chr16:82131600-82134400	Strong transcription	Duodenum Mucosa	Duodenum
9	chr16:82132000-82136600	Weak transcription	Fetal Intestine Small	intestine
10	chr16:82132600-82134200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr16:82132600-82143400	Weak transcription	HepG2	liver
12	chr16:82132800-82134400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr16:82133000-82135800	Weak transcription	Fetal Stomach	stomach
14	chr16:82133600-82134400	Strong transcription	Liver	Liver

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