Variant report

Variant	rs11648925
Chromosome Location	chr16:81587142-81587143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81587032..81590904-chr16:81592569..81595083,4	K562	blood:
2	chr16:81477897..81480070-chr16:81586724..81588364,2	MCF-7	breast:
3	chr16:81586015..81589398-chr16:81589613..81592514,4	MCF-7	breast:
4	chr16:81586835..81588438-chr16:81601236..81603502,2	MCF-7	breast:
5	chr16:81585781..81588255-chr16:81593534..81595879,2	MCF-7	breast:
6	chr16:81574586..81576745-chr16:81584543..81587499,2	K562	blood:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1000454	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1000455	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11639652	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11639751	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12928588	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35610022	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564885	0.90[EUR][1000 genomes]
rs7205651	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8054061	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	esv2754804	chr16:81579729-81606569	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81556000-81590000	Weak transcription	Dnd41	blood
2	chr16:81565200-81588200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:81570800-81594200	Weak transcription	Hela-S3	cervix
4	chr16:81573600-81594800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr16:81575000-81587600	Enhancers	Lung	lung
6	chr16:81577400-81591600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:81577600-81593200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:81580000-81587400	Weak transcription	Primary T cells from cord blood	blood
9	chr16:81580000-81588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr16:81580200-81597600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr16:81580400-81587600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr16:81581000-81587400	Enhancers	Stomach Mucosa	stomach
13	chr16:81581000-81588400	Weak transcription	Thymus	Thymus
14	chr16:81581000-81589200	Enhancers	Adipose Nuclei	Adipose
15	chr16:81581200-81588600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:81581400-81588200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:81581400-81588200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr16:81581600-81588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:81581600-81608400	Weak transcription	Primary B cells from cord blood	blood
20	chr16:81581800-81589200	Enhancers	Pancreas	Pancrea
21	chr16:81582000-81587400	Enhancers	Gastric	stomach
22	chr16:81582000-81587600	Enhancers	Colonic Mucosa	Colon
23	chr16:81582400-81588000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:81582400-81588000	Enhancers	HMEC	breast
25	chr16:81582600-81587800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr16:81582800-81588000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr16:81582800-81589400	Enhancers	Fetal Heart	heart
28	chr16:81583000-81591400	Genic enhancers	A549	lung
29	chr16:81583200-81587600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:81583200-81588200	Enhancers	Small Intestine	intestine
31	chr16:81583400-81587400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr16:81583400-81587600	Enhancers	Right Ventricle	heart
33	chr16:81583400-81588800	Enhancers	Esophagus	oesophagus
34	chr16:81583400-81589000	Enhancers	NHDF-Ad	bronchial
35	chr16:81583600-81587600	Enhancers	Right Atrium	heart
36	chr16:81583800-81587400	Enhancers	Placenta	Placenta
37	chr16:81583800-81587600	Enhancers	NH-A	brain
38	chr16:81583800-81588400	Enhancers	HUVEC	blood vessel
39	chr16:81583800-81589600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr16:81584000-81587200	Enhancers	Liver	Liver
41	chr16:81584000-81587200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr16:81584000-81587600	Enhancers	Fetal Brain Male	brain
43	chr16:81584000-81587600	Enhancers	Left Ventricle	heart
44	chr16:81584200-81587800	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr16:81584200-81587800	Enhancers	Duodenum Mucosa	Duodenum
46	chr16:81584400-81587400	Enhancers	HSMM	muscle
47	chr16:81584400-81587600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:81584400-81587600	Enhancers	HSMMtube	muscle
49	chr16:81584400-81588000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr16:81584600-81587400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links