Variant report

Variant	rs6564885
Chromosome Location	chr16:81583418-81583419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81581234..81583054-chr16:81583283..81584889,2	MCF-7	breast:
2	chr16:81576372..81580731-chr16:81581610..81586279,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1000454	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs1000455	0.89[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs11639652	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11639751	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11648925	0.90[EUR][1000 genomes]
rs12448684	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs12928588	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12932885	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12933858	0.83[CEU][hapmap]
rs2168798	0.88[CEU][hapmap]
rs35610022	0.89[EUR][1000 genomes]
rs7205651	0.91[CHB][hapmap]
rs8054061	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs876673	0.88[CEU][hapmap]
rs9925488	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1057791	chr16:81515036-81644651	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv542993	chr16:81515036-81644651	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1062659	chr16:81547280-81668786	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	esv2754804	chr16:81579729-81606569	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1898	chr16:81581637-81626505	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81556000-81590000	Weak transcription	Dnd41	blood
2	chr16:81560600-81584800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:81565200-81588200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:81566600-81584600	Weak transcription	Fetal Brain Female	brain
5	chr16:81570800-81594200	Weak transcription	Hela-S3	cervix
6	chr16:81573600-81594800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr16:81573800-81586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr16:81575000-81587600	Enhancers	Lung	lung
9	chr16:81577000-81583600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr16:81577400-81583600	Weak transcription	K562	blood
11	chr16:81577400-81591600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:81577600-81593200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:81578200-81584000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:81578400-81583600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr16:81578600-81583800	Weak transcription	HUVEC	blood vessel
16	chr16:81578800-81584000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr16:81578800-81585800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr16:81578800-81587000	Weak transcription	NHLF	lung
19	chr16:81579000-81583800	Weak transcription	NH-A	brain
20	chr16:81579000-81584800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:81579000-81585400	Weak transcription	Brain Hippocampus Middle	brain
22	chr16:81579000-81585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr16:81579000-81585400	Weak transcription	Ovary	ovary
24	chr16:81579000-81586400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr16:81579200-81584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr16:81579200-81584600	Weak transcription	Osteobl	bone
27	chr16:81579400-81586800	Weak transcription	Brain Substantia Nigra	brain
28	chr16:81579600-81584800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:81579800-81583800	Weak transcription	GM12878-XiMat	blood
30	chr16:81580000-81584000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr16:81580000-81584400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr16:81580000-81585400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr16:81580000-81586000	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr16:81580000-81587400	Weak transcription	Primary T cells from cord blood	blood
35	chr16:81580000-81588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr16:81580200-81585800	Genic enhancers	Fetal Intestine Small	intestine
37	chr16:81580200-81597600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr16:81580400-81584000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:81580400-81587600	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr16:81580600-81585200	Enhancers	Fetal Intestine Large	intestine
41	chr16:81580800-81586200	Weak transcription	Brain Anterior Caudate	brain
42	chr16:81581000-81583800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr16:81581000-81584200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr16:81581000-81585000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr16:81581000-81585600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr16:81581000-81586600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr16:81581000-81587400	Enhancers	Stomach Mucosa	stomach
48	chr16:81581000-81588400	Weak transcription	Thymus	Thymus
49	chr16:81581000-81589200	Enhancers	Adipose Nuclei	Adipose
50	chr16:81581200-81585400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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