Variant report

Variant	rs11649571
Chromosome Location	chr16:75725190-75725191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75723045..75725785-chr16:75728359..75730585,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GABARAPL2-7	chr16:75725151-75725424	NONHSAT143758

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1133766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11640406	1.00[EUR][1000 genomes]
rs11640743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11641108	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11646086	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11646574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11648206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11649504	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11649505	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11860980	0.88[EUR][1000 genomes]
rs11862453	0.88[EUR][1000 genomes]
rs11864677	0.92[EUR][1000 genomes]
rs12325271	0.85[AMR][1000 genomes]
rs16942022	0.84[EUR][1000 genomes]
rs16942809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942870	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943274	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16943285	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17676012	0.85[AMR][1000 genomes]
rs1865492	0.82[EUR][1000 genomes]
rs1991052	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233803	0.82[EUR][1000 genomes]
rs2233805	0.82[EUR][1000 genomes]
rs2233810	0.82[EUR][1000 genomes]
rs35135836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892159	0.84[EUR][1000 genomes]
rs60376290	0.82[EUR][1000 genomes]
rs60415088	0.84[EUR][1000 genomes]
rs60545422	0.84[EUR][1000 genomes]
rs7186790	0.84[EUR][1000 genomes]
rs7193257	0.82[EUR][1000 genomes]
rs7195089	0.84[EUR][1000 genomes]
rs7203608	0.87[AMR][1000 genomes]
rs73613267	0.88[EUR][1000 genomes]
rs73613272	0.88[EUR][1000 genomes]
rs73615089	0.84[EUR][1000 genomes]
rs9989360	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	esv3390407	chr16:75701870-75751074	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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