Variant report

Variant	rs16942809
Chromosome Location	chr16:75743137-75743138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75741611..75743630-chr16:75751631..75753594,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10468346	1.00[JPT][hapmap]
rs1133766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11546854	0.83[EUR][1000 genomes]
rs11640406	0.94[EUR][1000 genomes]
rs11640743	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11641108	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11646086	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11646574	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11648206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11649504	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11649505	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11649571	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860980	0.94[EUR][1000 genomes]
rs11862453	0.94[EUR][1000 genomes]
rs11864677	0.90[EUR][1000 genomes]
rs11866252	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12325271	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16941008	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs16941066	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs16942022	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs16942870	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16943191	0.88[AFR][1000 genomes]
rs16943274	1.00[CEU][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16943285	1.00[CEU][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17676012	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1865492	0.87[EUR][1000 genomes]
rs1991052	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233803	0.87[EUR][1000 genomes]
rs2233805	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2233810	0.87[EUR][1000 genomes]
rs2242408	0.85[CEU][hapmap]
rs2453141	1.00[JPT][hapmap]
rs35135836	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56892159	0.89[EUR][1000 genomes]
rs58000098	0.83[EUR][1000 genomes]
rs58657577	0.83[EUR][1000 genomes]
rs58996069	0.83[EUR][1000 genomes]
rs59624897	0.83[EUR][1000 genomes]
rs59794444	0.83[EUR][1000 genomes]
rs60376290	0.87[EUR][1000 genomes]
rs60415088	0.89[EUR][1000 genomes]
rs60545422	0.89[EUR][1000 genomes]
rs60664312	0.83[EUR][1000 genomes]
rs61588474	0.83[EUR][1000 genomes]
rs62619985	0.83[EUR][1000 genomes]
rs6834	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7186790	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7193257	0.87[EUR][1000 genomes]
rs7195089	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7203608	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73613267	0.94[EUR][1000 genomes]
rs73613272	0.94[EUR][1000 genomes]
rs73615089	0.89[EUR][1000 genomes]
rs73615301	0.82[EUR][1000 genomes]
rs8051771	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs8053257	0.85[CEU][hapmap]
rs9989360	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv3390407	chr16:75701870-75751074	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv906930	chr16:75728261-75872464	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv984356	chr16:75739287-75743569	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75739200-75743600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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