Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60163070..60164734-chr17:60167356..60169159,2	MCF-7	breast:
2	chr17:60003973..60006334-chr17:60168054..60170751,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11079461	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11079464	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11870331	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4456566	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4479315	0.98[ASN][1000 genomes]
rs4493126	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968469	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968473	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968477	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58046762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67274807	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72845416	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72845417	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72845418	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8081599	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8081812	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9303455	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9889324	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9889676	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60163600-60169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:60166400-60168600	Enhancers	Stomach Mucosa	stomach
3	chr17:60167000-60169800	Enhancers	Fetal Intestine Small	intestine
4	chr17:60168200-60169400	Enhancers	Liver	Liver
5	chr17:60168200-60171400	Enhancers	HepG2	liver
6	chr17:60168400-60168800	Weak transcription	Pancreas	Pancrea
7	chr17:60168400-60169400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr17:60168400-60171200	Weak transcription	Small Intestine	intestine

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