Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60152989..60156708-chr17:60160821..60162993,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11079461	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11079464	0.85[EUR][1000 genomes]
rs11649711	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4456566	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4479315	0.93[ASN][1000 genomes]
rs4493126	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4968466	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4968469	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4968473	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4968477	0.85[EUR][1000 genomes]
rs58046762	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6504079	0.80[EUR][1000 genomes]
rs67274807	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7207930	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7222262	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72845411	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72845416	0.87[EUR][1000 genomes]
rs72845417	0.87[EUR][1000 genomes]
rs72845418	0.87[EUR][1000 genomes]
rs8072101	0.80[EUR][1000 genomes]
rs8081599	0.85[EUR][1000 genomes]
rs8081812	0.85[EUR][1000 genomes]
rs9303455	0.88[EUR][1000 genomes]
rs9747976	0.81[EUR][1000 genomes]
rs9889324	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9889676	0.87[EUR][1000 genomes]
rs9908352	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9913443	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60152400-60155200	Enhancers	Fetal Intestine Small	intestine
2	chr17:60154400-60155800	Enhancers	Pancreas	Pancrea
3	chr17:60154600-60156600	Enhancers	Liver	Liver
4	chr17:60154800-60155800	Enhancers	Duodenum Mucosa	Duodenum
5	chr17:60154800-60156000	Enhancers	HepG2	liver

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