Variant report

Variant	rs11651042
Chromosome Location	chr17:38406907-38406908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38405451..38407862-chr17:38420655..38423470,2	K562	blood:
2	chr17:38399598..38402246-chr17:38404914..38407848,2	K562	blood:
3	chr17:38405638..38407539-chr17:38415258..38417148,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10451257	1.00[CEU][hapmap]
rs12937995	1.00[CEU][hapmap]
rs35783632	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38376600-38412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:38376600-38416800	Weak transcription	Aorta	Aorta
3	chr17:38377000-38418400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:38377400-38408000	Weak transcription	Small Intestine	intestine
5	chr17:38377600-38412800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:38379200-38413000	Weak transcription	Pancreas	Pancrea
7	chr17:38381200-38412400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr17:38381400-38407000	Weak transcription	Hela-S3	cervix
9	chr17:38381400-38407400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr17:38381400-38407400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr17:38381400-38407400	Weak transcription	Osteobl	bone
12	chr17:38381800-38407600	Weak transcription	K562	blood
13	chr17:38381800-38408000	Weak transcription	Right Ventricle	heart
14	chr17:38382000-38407600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:38382000-38412400	Weak transcription	Fetal Lung	lung
16	chr17:38385400-38407600	Weak transcription	NHEK	skin
17	chr17:38386000-38407800	Weak transcription	Adipose Nuclei	Adipose
18	chr17:38389800-38407600	Weak transcription	NH-A	brain
19	chr17:38390200-38412200	Weak transcription	HepG2	liver
20	chr17:38390200-38413000	Weak transcription	Colonic Mucosa	Colon
21	chr17:38390400-38407400	Weak transcription	HUVEC	blood vessel
22	chr17:38390800-38416600	Weak transcription	Gastric	stomach
23	chr17:38391000-38407000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:38391000-38407600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr17:38391000-38408000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr17:38391000-38409800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:38391000-38412400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr17:38391000-38412600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:38391000-38412600	Weak transcription	Placenta	Placenta
30	chr17:38391200-38407600	Weak transcription	A549	lung
31	chr17:38391200-38408000	Weak transcription	Ovary	ovary
32	chr17:38391200-38412200	Weak transcription	Fetal Thymus	thymus
33	chr17:38391200-38412600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr17:38391200-38412600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr17:38391200-38413600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:38391200-38416800	Weak transcription	Esophagus	oesophagus
37	chr17:38391400-38413600	Weak transcription	Spleen	Spleen
38	chr17:38391400-38414600	Weak transcription	Primary B cells from cord blood	blood
39	chr17:38391600-38408000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr17:38392000-38412600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr17:38392600-38412600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr17:38392800-38407400	Weak transcription	Fetal Intestine Large	intestine
43	chr17:38392800-38412200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr17:38392800-38412600	Weak transcription	Left Ventricle	heart
45	chr17:38392800-38413400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr17:38393000-38407800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr17:38393800-38412600	Weak transcription	Fetal Muscle Leg	muscle
48	chr17:38393800-38413000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr17:38394000-38407800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:38396400-38411000	Weak transcription	Fetal Stomach	stomach

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