Variant report

Variant	rs35783632
Chromosome Location	chr17:38508968-38508969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38472788..38480698-chr17:38493295..38509406,39	K562	blood:
2	chr17:38464514..38466930-chr17:38507552..38511765,4	K562	blood:
3	chr17:38508440..38510370-chr17:38512400..38513964,2	MCF-7	breast:
4	chr17:38502998..38505435-chr17:38507760..38509273,2	MCF-7	breast:
5	chr17:38457066..38460899-chr17:38504442..38513119,13	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000270145	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs10512482	0.92[EUR][1000 genomes]
rs1104761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11540720	0.92[EUR][1000 genomes]
rs11651042	1.00[TSI][hapmap]
rs12103533	0.92[EUR][1000 genomes]
rs15685	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16965660	0.92[EUR][1000 genomes]
rs16965669	0.92[EUR][1000 genomes]
rs16965734	0.92[EUR][1000 genomes]
rs16965736	0.92[EUR][1000 genomes]
rs16965748	0.92[EUR][1000 genomes]
rs16965774	0.92[EUR][1000 genomes]
rs16965778	0.92[EUR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17616365	1.00[AMR][1000 genomes]
rs17616543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17616879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17617263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17618397	1.00[AFR][1000 genomes]
rs17678817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17678990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679038	1.00[AFR][1000 genomes]
rs17679086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2012667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2229773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362320	0.92[EUR][1000 genomes]
rs28362321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526298	0.92[EUR][1000 genomes]
rs33998939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34270904	0.92[EUR][1000 genomes]
rs34300454	0.92[EUR][1000 genomes]
rs35898909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41283417	0.92[EUR][1000 genomes]
rs41283423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4134998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4135030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45612441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7214783	0.85[EUR][1000 genomes]
rs7219013	1.00[LWK][hapmap]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]
rs8067519	0.92[EUR][1000 genomes]
rs8071687	0.92[EUR][1000 genomes]
rs8077482	0.92[EUR][1000 genomes]
rs9889905	0.92[EUR][1000 genomes]
rs9891944	1.00[EUR][1000 genomes]
rs9894364	0.92[EUR][1000 genomes]
rs9894807	0.92[EUR][1000 genomes]
rs9898500	0.92[EUR][1000 genomes]
rs9899425	0.92[EUR][1000 genomes]
rs9900154	0.92[EUR][1000 genomes]
rs9903293	0.92[EUR][1000 genomes]
rs9906274	1.00[EUR][1000 genomes]
rs9909777	0.92[EUR][1000 genomes]
rs9909811	0.92[EUR][1000 genomes]
rs9910373	0.92[EUR][1000 genomes]
rs9915775	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1058540	chr17:38467043-38515087	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv908222	chr17:38504241-38526973	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38502800-38509400	Genic enhancers	Fetal Stomach	stomach
2	chr17:38503200-38512600	Genic enhancers	Spleen	Spleen
3	chr17:38503400-38509400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:38503400-38509600	Genic enhancers	Fetal Intestine Large	intestine
5	chr17:38503600-38513000	Genic enhancers	A549	lung
6	chr17:38503800-38513600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr17:38504000-38509400	Genic enhancers	Fetal Intestine Small	intestine
8	chr17:38504000-38511600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
9	chr17:38504000-38511600	Weak transcription	Hela-S3	cervix
10	chr17:38504400-38509600	Genic enhancers	Lung	lung
11	chr17:38504400-38509800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:38504400-38514000	Genic enhancers	Fetal Muscle Trunk	muscle
13	chr17:38504400-38514200	Genic enhancers	Fetal Muscle Leg	muscle
14	chr17:38504600-38509000	Genic enhancers	Muscle Satellite Cultured Cells	--
15	chr17:38504600-38511400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr17:38504800-38509400	Genic enhancers	Duodenum Mucosa	Duodenum
17	chr17:38504800-38510000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr17:38504800-38513000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:38505000-38513600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr17:38505200-38509000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:38505200-38509400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr17:38505200-38509600	Genic enhancers	Colonic Mucosa	Colon
23	chr17:38505200-38511000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr17:38505200-38511400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:38505200-38511800	Weak transcription	Small Intestine	intestine
26	chr17:38505200-38518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:38505400-38511000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr17:38505400-38511400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:38505400-38513000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr17:38505400-38514200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:38505600-38509200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
32	chr17:38505600-38509600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr17:38505600-38512800	Strong transcription	Primary T cells from cord blood	blood
34	chr17:38506000-38511000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr17:38506200-38511000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr17:38506200-38515000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr17:38506400-38510400	Genic enhancers	Primary B cells from cord blood	blood
38	chr17:38506400-38511000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr17:38506400-38512000	Strong transcription	Pancreas	Pancrea
40	chr17:38506400-38513000	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr17:38506600-38509000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
42	chr17:38506800-38509600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr17:38506800-38512800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr17:38506800-38512800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
45	chr17:38506800-38513400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr17:38507000-38510600	Strong transcription	Ovary	ovary
47	chr17:38507000-38513400	Strong transcription	Gastric	stomach
48	chr17:38507000-38514600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr17:38507200-38509200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr17:38507200-38509200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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