Variant report

Variant	rs17618397
Chromosome Location	chr17:38571706-38571707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38571689..38573604-chr17:38633869..38636651,3	K562	blood:
2	chr17:38571639..38573723-chr17:38715202..38717079,2	K562	blood:
3	chr17:38518730..38520682-chr17:38569502..38573340,3	MCF-7	breast:
4	chr17:38455293..38459575-chr17:38570214..38574368,4	MCF-7	breast:
5	chr17:38571032..38573663-chr17:38599066..38602957,3	K562	blood:
6	chr17:38571689..38573226-chr17:38635126..38636651,2	K562	blood:
7	chr17:38511730..38513729-chr17:38571391..38573347,2	MCF-7	breast:
8	chr17:38569496..38572220-chr17:38657249..38659356,2	K562	blood:
9	chr17:38563221..38564956-chr17:38570311..38572102,2	MCF-7	breast:
10	chr17:38471740..38479367-chr17:38570407..38574457,9	MCF-7	breast:
11	chr17:38471989..38473888-chr17:38570252..38571888,2	MCF-7	breast:
12	chr17:38457285..38458135-chr17:38571246..38571957,2	MCF-7	breast:
13	chr17:38514581..38515373-chr17:38571328..38571846,2	MCF-7	breast:
14	chr17:38569158..38571862-chr17:38686767..38689398,2	K562	blood:
15	chr17:38546072..38547911-chr17:38570346..38572466,2	K562	blood:
16	chr17:38571221..38576195-chr17:38597437..38603899,8	K562	blood:
17	chr17:38569801..38571878-chr17:38675987..38678508,2	K562	blood:
18	chr17:38571246..38572914-chr17:38603298..38604938,2	MCF-7	breast:
19	chr17:38569573..38571773-chr17:38707489..38709886,2	MCF-7	breast:
20	chr17:38571667..38573665-chr17:38677679..38680655,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222881	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000270145	Chromatin interaction
ENSG00000131746	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs15685	1.00[AFR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17557879	1.00[AFR][1000 genomes]
rs17616879	1.00[AFR][1000 genomes]
rs17678959	1.00[AFR][1000 genomes]
rs17678990	1.00[AFR][1000 genomes]
rs17679038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679086	1.00[AFR][1000 genomes]
rs17679361	1.00[AFR][1000 genomes]
rs17680217	1.00[AFR][1000 genomes]
rs17680410	1.00[AFR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes]
rs2012667	1.00[AFR][1000 genomes]
rs2229773	1.00[AFR][1000 genomes]
rs28362321	1.00[AFR][1000 genomes]
rs33998939	1.00[AFR][1000 genomes]
rs35783632	1.00[AFR][1000 genomes]
rs35898909	1.00[AFR][1000 genomes]
rs41283423	1.00[AFR][1000 genomes]
rs4134993	1.00[AFR][1000 genomes]
rs4134998	1.00[AFR][1000 genomes]
rs4135005	1.00[AFR][1000 genomes]
rs4135007	1.00[AFR][1000 genomes]
rs4135012	1.00[AFR][1000 genomes]
rs4135019	1.00[AFR][1000 genomes]
rs4135021	1.00[AFR][1000 genomes]
rs4135027	1.00[AFR][1000 genomes]
rs4135030	1.00[AFR][1000 genomes]
rs45612441	1.00[AFR][1000 genomes]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908223	chr17:38530799-38609187	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38542600-38571800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:38543400-38571800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:38544000-38571800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:38544400-38573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:38545200-38573200	Weak transcription	Gastric	stomach
6	chr17:38546000-38573600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr17:38546400-38572200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:38546400-38572800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr17:38546400-38573200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr17:38548200-38572000	Weak transcription	Brain Germinal Matrix	brain
11	chr17:38548400-38572800	Weak transcription	Primary B cells from cord blood	blood
12	chr17:38549800-38573000	Weak transcription	Fetal Intestine Large	intestine
13	chr17:38551000-38573000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr17:38552200-38573400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr17:38557400-38572800	Weak transcription	Fetal Kidney	kidney
16	chr17:38557600-38571800	Weak transcription	Fetal Brain Female	brain
17	chr17:38557800-38572800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr17:38559200-38573000	Weak transcription	Primary T cells from cord blood	blood
19	chr17:38559200-38573200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:38559400-38573200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr17:38559800-38572800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:38563200-38572600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr17:38565800-38573000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:38567000-38571800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:38567000-38572400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr17:38567000-38572400	Weak transcription	Fetal Muscle Leg	muscle
27	chr17:38567200-38573000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr17:38567400-38572000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:38567600-38572000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:38567800-38571800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr17:38568000-38571800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr17:38568200-38571800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr17:38568600-38571800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr17:38568600-38572000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr17:38568600-38572400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr17:38568800-38571800	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr17:38569200-38571800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr17:38569200-38572800	Weak transcription	Fetal Lung	lung
39	chr17:38569200-38573000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:38569200-38573000	Weak transcription	Placenta	Placenta
41	chr17:38569400-38572200	Weak transcription	HSMM	muscle
42	chr17:38569600-38572200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr17:38569800-38572000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr17:38569800-38573000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr17:38570200-38572400	Genic enhancers	HepG2	liver
46	chr17:38570400-38572000	Genic enhancers	HMEC	breast
47	chr17:38570600-38572000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr17:38570800-38572000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr17:38570800-38572000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
50	chr17:38570800-38572400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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