Variant report

Variant	rs15685
Chromosome Location	chr17:38516971-38516972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38515380..38518267-chr17:38554821..38556502,2	K562	blood:
2	chr17:38513683..38518140-chr17:38518168..38520491,4	MCF-7	breast:
3	chr17:38516138..38520860-chr17:38599243..38602533,5	K562	blood:
4	chr17:38516676..38522970-chr17:38526479..38531615,7	K562	blood:
5	chr17:38495479..38497798-chr17:38515980..38518835,2	K562	blood:

Variant related genes	Relation type
ENSG00000183153	Chromatin interaction
ENSG00000252618	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000131747	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10305288	1.00[AFR][1000 genomes]
rs10305296	1.00[AFR][1000 genomes]
rs10305303	1.00[AFR][1000 genomes]
rs10512482	0.92[EUR][1000 genomes]
rs1104761	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11540720	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11867902	1.00[CEU][hapmap]
rs12103533	0.92[EUR][1000 genomes]
rs16965660	0.92[EUR][1000 genomes]
rs16965669	0.92[EUR][1000 genomes]
rs16965734	0.92[EUR][1000 genomes]
rs16965736	0.92[EUR][1000 genomes]
rs16965748	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs16965774	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16965778	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17557495	1.00[AFR][1000 genomes]
rs17616543	1.00[EUR][1000 genomes]
rs17616672	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17616879	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17617263	1.00[EUR][1000 genomes]
rs17618397	1.00[AFR][1000 genomes]
rs17678817	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17678959	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17678990	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17679038	1.00[AFR][1000 genomes]
rs17679086	1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17679361	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17680217	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17680410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17680507	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17680624	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17680685	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17680704	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2012667	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2229773	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28362320	0.92[EUR][1000 genomes]
rs28362321	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28526298	0.92[EUR][1000 genomes]
rs33998939	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34270904	0.92[EUR][1000 genomes]
rs34300454	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[EUR][1000 genomes]
rs35783632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35898909	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41283417	0.92[EUR][1000 genomes]
rs41283423	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4134993	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4134998	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135005	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135007	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135012	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135019	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135021	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135027	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4135030	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45612441	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7214783	0.85[EUR][1000 genomes]
rs72819623	1.00[AFR][1000 genomes]
rs72819624	1.00[AFR][1000 genomes]
rs72819628	1.00[AFR][1000 genomes]
rs72819630	1.00[AFR][1000 genomes]
rs72819632	1.00[AFR][1000 genomes]
rs72819633	1.00[AFR][1000 genomes]
rs72819651	1.00[AFR][1000 genomes]
rs8067519	0.92[EUR][1000 genomes]
rs8071687	0.92[EUR][1000 genomes]
rs8077482	0.92[EUR][1000 genomes]
rs9889905	0.92[EUR][1000 genomes]
rs9891944	1.00[EUR][1000 genomes]
rs9894364	0.92[EUR][1000 genomes]
rs9894807	0.92[EUR][1000 genomes]
rs9895336	1.00[MEX][hapmap]
rs9898500	0.92[EUR][1000 genomes]
rs9899425	0.92[EUR][1000 genomes]
rs9900154	0.92[EUR][1000 genomes]
rs9903293	0.92[EUR][1000 genomes]
rs9906274	1.00[EUR][1000 genomes]
rs9909777	0.92[EUR][1000 genomes]
rs9909811	0.92[EUR][1000 genomes]
rs9910373	0.92[EUR][1000 genomes]
rs9915775	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv908222	chr17:38504241-38526973	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38505200-38518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:38508800-38519000	Weak transcription	Psoas Muscle	Psoas
3	chr17:38509200-38518400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:38509200-38518400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr17:38510800-38519000	Weak transcription	Aorta	Aorta
6	chr17:38512000-38518400	Weak transcription	Pancreas	Pancrea
7	chr17:38512000-38518600	Weak transcription	Right Atrium	heart
8	chr17:38512400-38518600	Weak transcription	HMEC	breast
9	chr17:38512600-38517400	Weak transcription	Esophagus	oesophagus
10	chr17:38512800-38519000	Weak transcription	HSMMtube	muscle
11	chr17:38513000-38518600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:38513000-38518600	Weak transcription	Ovary	ovary
13	chr17:38513000-38518800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:38513000-38519000	Weak transcription	Left Ventricle	heart
15	chr17:38513000-38519000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr17:38513400-38517600	Weak transcription	Spleen	Spleen
17	chr17:38513400-38518600	Weak transcription	Gastric	stomach
18	chr17:38513600-38517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr17:38513600-38517800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:38513600-38518400	Weak transcription	Lung	lung
21	chr17:38514000-38517200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:38514200-38517200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr17:38514200-38517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr17:38514200-38517800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:38514400-38517600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr17:38515200-38518400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr17:38515200-38518400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr17:38515200-38518400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr17:38515200-38518400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:38515200-38518400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr17:38515200-38518600	Weak transcription	HSMM	muscle
32	chr17:38515200-38518600	Weak transcription	NHDF-Ad	bronchial
33	chr17:38515200-38518800	Weak transcription	HUVEC	blood vessel
34	chr17:38515200-38519000	Weak transcription	Primary B cells from cord blood	blood
35	chr17:38515200-38519400	Weak transcription	Brain Angular Gyrus	brain
36	chr17:38515400-38518200	Weak transcription	Dnd41	blood
37	chr17:38515400-38518400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:38515400-38518400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:38515400-38518400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr17:38515400-38518400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr17:38515400-38518400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr17:38515400-38518400	Weak transcription	NHLF	lung
43	chr17:38515400-38518600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr17:38515400-38518600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:38515400-38518600	Weak transcription	Liver	Liver
46	chr17:38515400-38519800	Weak transcription	Stomach Mucosa	stomach
47	chr17:38515600-38517200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:38515600-38518400	Weak transcription	Hela-S3	cervix
49	chr17:38515600-38518400	Weak transcription	K562	blood
50	chr17:38515600-38518800	Weak transcription	Muscle Satellite Cultured Cells	--

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